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Mutant Information

Mutant Name	FN-208 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-208 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3356184 T-A Hetero INTERGENIC
SBS Chr1 4468312 T-C Hetero INTRON
SBS Chr1 6026071 A-G Hetero INTRON
SBS Chr1 21438422 T-C Hetero INTERGENIC
SBS Chr1 32139086 A-T Homo UTR_3_PRIME
SBS Chr2 16285214 A-T Hetero INTERGENIC
SBS Chr2 33576311 T-A Hetero INTERGENIC
SBS Chr3 34006255 T-A Hetero INTERGENIC
SBS Chr3 36571093 A-T Hetero INTERGENIC
SBS Chr4 14716936 C-T Homo INTERGENIC
SBS Chr4 17740381 T-A Homo INTERGENIC
SBS Chr4 20067098 C-A Homo INTERGENIC
SBS Chr4 26491522 G-T Hetero INTERGENIC
SBS Chr5 1952060 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 7983572 T-C Hetero INTERGENIC
SBS Chr5 25942717 C-T Hetero INTERGENIC
SBS Chr6 8195946 G-A Hetero INTERGENIC
SBS Chr6 8401242 C-T Hetero INTERGENIC
SBS Chr6 21828625 G-T Hetero INTERGENIC
SBS Chr7 3621268 T-C Homo INTERGENIC
SBS Chr8 3152850 G-A Hetero INTERGENIC
SBS Chr9 15909953 G-A Hetero INTERGENIC
SBS Chr10 17842213 G-A Hetero INTERGENIC
SBS Chr10 22011137 C-A Hetero INTERGENIC
SBS Chr11 11089068 G-A Homo INTERGENIC
SBS Chr11 18800551 G-A Hetero INTRON
SBS Chr11 20174921 C-A Hetero INTERGENIC
SBS Chr11 25287497 C-T Homo INTERGENIC
SBS Chr12 1441004 G-C Hetero INTERGENIC
SBS Chr12 4784756 G-A Hetero INTERGENIC
SBS Chr12 4928168 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1555855 1555856 1
Deletion Chr7 1881616 1881623 7
Deletion Chr3 3143398 3143577 179
Deletion Chr10 8269928 8269930 2
Deletion Chr1 8357263 8357264 1
Deletion Chr9 8945221 8945262 41
Deletion Chr12 13761523 13761530 7
Deletion Chr11 14864118 14864127 9
Deletion Chr5 15830860 15830862 2
Deletion Chr4 25911832 25911834 2
Deletion Chr7 29358748 29358749 1
Deletion Chr1 35794001 35843000 48999 8

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 10852064 11220032 OsKitaake03g154200
Inversion Chr3 10852068 11220021 OsKitaake03g154200
Inversion Chr2 16157216 17084958
Inversion Chr2 16157229 16755795 OsKitaake02g171200

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1180179 Chr1 35823691 OsKitaake01g379600
Translocation Chr12 1433022 Chr2 15535682 OsKitaake12g021500
Translocation Chr12 2091986 Chr2 15535538
Translocation Chr10 9123150 Chr8 25947923
Translocation Chr10 9123365 Chr8 25947785

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3356184	T-A	Hetero	INTERGENIC
SBS	Chr1	4468312	T-C	Hetero	INTRON
SBS	Chr1	6026071	A-G	Hetero	INTRON
SBS	Chr1	21438422	T-C	Hetero	INTERGENIC
SBS	Chr1	32139086	A-T	Homo	UTR_3_PRIME
SBS	Chr2	16285214	A-T	Hetero	INTERGENIC
SBS	Chr2	33576311	T-A	Hetero	INTERGENIC
SBS	Chr3	34006255	T-A	Hetero	INTERGENIC
SBS	Chr3	36571093	A-T	Hetero	INTERGENIC
SBS	Chr4	14716936	C-T	Homo	INTERGENIC
SBS	Chr4	17740381	T-A	Homo	INTERGENIC
SBS	Chr4	20067098	C-A	Homo	INTERGENIC
SBS	Chr4	26491522	G-T	Hetero	INTERGENIC
SBS	Chr5	1952060	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	7983572	T-C	Hetero	INTERGENIC
SBS	Chr5	25942717	C-T	Hetero	INTERGENIC
SBS	Chr6	8195946	G-A	Hetero	INTERGENIC
SBS	Chr6	8401242	C-T	Hetero	INTERGENIC
SBS	Chr6	21828625	G-T	Hetero	INTERGENIC
SBS	Chr7	3621268	T-C	Homo	INTERGENIC
SBS	Chr8	3152850	G-A	Hetero	INTERGENIC
SBS	Chr9	15909953	G-A	Hetero	INTERGENIC
SBS	Chr10	17842213	G-A	Hetero	INTERGENIC
SBS	Chr10	22011137	C-A	Hetero	INTERGENIC
SBS	Chr11	11089068	G-A	Homo	INTERGENIC
SBS	Chr11	18800551	G-A	Hetero	INTRON
SBS	Chr11	20174921	C-A	Hetero	INTERGENIC
SBS	Chr11	25287497	C-T	Homo	INTERGENIC
SBS	Chr12	1441004	G-C	Hetero	INTERGENIC
SBS	Chr12	4784756	G-A	Hetero	INTERGENIC
SBS	Chr12	4928168	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1555855	1555856	1
Deletion	Chr7	1881616	1881623	7
Deletion	Chr3	3143398	3143577	179
Deletion	Chr10	8269928	8269930	2
Deletion	Chr1	8357263	8357264	1
Deletion	Chr9	8945221	8945262	41
Deletion	Chr12	13761523	13761530	7
Deletion	Chr11	14864118	14864127	9
Deletion	Chr5	15830860	15830862	2
Deletion	Chr4	25911832	25911834	2
Deletion	Chr7	29358748	29358749	1
Deletion	Chr1	35794001	35843000	48999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10852064	11220032	OsKitaake03g154200
Inversion	Chr3	10852068	11220021	OsKitaake03g154200
Inversion	Chr2	16157216	17084958
Inversion	Chr2	16157229	16755795	OsKitaake02g171200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes