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Mutant Information

Mutant Name	FN-21 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-21 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr2 3849421 C-G Hetero SPLICE_SITE_REGION
SBS Chr2 6977329 G-A Hetero INTERGENIC
SBS Chr2 21978649 G-A Hetero INTERGENIC
SBS Chr2 29269446 T-G Hetero INTRON
SBS Chr2 29320322 A-C Homo INTRON
SBS Chr3 4588629 C-G Hetero INTERGENIC
SBS Chr3 11252734 G-A Hetero INTERGENIC
SBS Chr3 34985948 T-C Hetero INTRON
SBS Chr4 593603 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g004400
SBS Chr4 6052402 C-G Hetero INTERGENIC
SBS Chr4 7819826 C-T Homo INTERGENIC
SBS Chr4 21301511 T-C Homo INTERGENIC
SBS Chr5 2183468 C-A Homo INTERGENIC
SBS Chr5 2623481 G-A Homo INTRON
SBS Chr5 4318472 G-A Homo INTERGENIC
SBS Chr5 4441833 G-T Homo UTR_3_PRIME
SBS Chr5 4441834 T-A Homo UTR_3_PRIME
SBS Chr5 8913207 C-G Hetero INTERGENIC
SBS Chr5 23979688 T-C Homo INTERGENIC
SBS Chr5 29056309 G-A Homo SYNONYMOUS_CODING
SBS Chr5 29056314 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g274600
SBS Chr6 12844344 G-A Hetero INTERGENIC
SBS Chr6 15347613 G-A Hetero INTERGENIC
SBS Chr7 9836100 C-G Hetero INTERGENIC
SBS Chr7 18578542 G-A Homo INTERGENIC
SBS Chr8 17557249 C-T Hetero INTERGENIC
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr9 10746033 T-C Hetero UTR_3_PRIME
SBS Chr9 19637168 G-A Homo INTERGENIC
SBS Chr10 5648185 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g039000
SBS Chr10 9421826 T-G Hetero INTERGENIC
SBS Chr11 8330845 C-T Hetero INTERGENIC
SBS Chr11 8700651 T-A Hetero INTERGENIC
SBS Chr11 8917869 C-T Hetero INTERGENIC
SBS Chr11 19985911 T-C Homo INTRON
SBS Chr12 15744847 G-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 8082492 8082494 2
Deletion Chr9 15923319 15923321 2
Deletion Chr9 19976659 19976660 1 OsKitaake09g166600
Deletion Chr5 21608509 21608524 15
Deletion Chr1 22933400 22933406 6
Deletion Chr1 26693454 26693455 1
Deletion Chr1 33188717 33188737 20
Deletion Chr3 33287785 33288044 259
Deletion Chr2 37072073 37072075 2 OsKitaake02g398400

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 21254170 21254173 2
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635
Insertion Chr7 11037064 11037067 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 6249850 6251105
Inversion Chr8 6249853 6251111
Inversion Chr12 18722997 19437538
Inversion Chr12 18724775 19437546

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 19591231 Chr1 32842188 OsKitaake01g333700
Translocation Chr12 19596905 Chr1 32842192 OsKitaake01g333700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr2	3849421	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr2	6977329	G-A	Hetero	INTERGENIC
SBS	Chr2	21978649	G-A	Hetero	INTERGENIC
SBS	Chr2	29269446	T-G	Hetero	INTRON
SBS	Chr2	29320322	A-C	Homo	INTRON
SBS	Chr3	4588629	C-G	Hetero	INTERGENIC
SBS	Chr3	11252734	G-A	Hetero	INTERGENIC
SBS	Chr3	34985948	T-C	Hetero	INTRON
SBS	Chr4	593603	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g004400
SBS	Chr4	6052402	C-G	Hetero	INTERGENIC
SBS	Chr4	7819826	C-T	Homo	INTERGENIC
SBS	Chr4	21301511	T-C	Homo	INTERGENIC
SBS	Chr5	2183468	C-A	Homo	INTERGENIC
SBS	Chr5	2623481	G-A	Homo	INTRON
SBS	Chr5	4318472	G-A	Homo	INTERGENIC
SBS	Chr5	4441833	G-T	Homo	UTR_3_PRIME
SBS	Chr5	4441834	T-A	Homo	UTR_3_PRIME
SBS	Chr5	8913207	C-G	Hetero	INTERGENIC
SBS	Chr5	23979688	T-C	Homo	INTERGENIC
SBS	Chr5	29056309	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	29056314	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g274600
SBS	Chr6	12844344	G-A	Hetero	INTERGENIC
SBS	Chr6	15347613	G-A	Hetero	INTERGENIC
SBS	Chr7	9836100	C-G	Hetero	INTERGENIC
SBS	Chr7	18578542	G-A	Homo	INTERGENIC
SBS	Chr8	17557249	C-T	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr9	10746033	T-C	Hetero	UTR_3_PRIME
SBS	Chr9	19637168	G-A	Homo	INTERGENIC
SBS	Chr10	5648185	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g039000
SBS	Chr10	9421826	T-G	Hetero	INTERGENIC
SBS	Chr11	8330845	C-T	Hetero	INTERGENIC
SBS	Chr11	8700651	T-A	Hetero	INTERGENIC
SBS	Chr11	8917869	C-T	Hetero	INTERGENIC
SBS	Chr11	19985911	T-C	Homo	INTRON
SBS	Chr12	15744847	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	8082492	8082494	2
Deletion	Chr9	15923319	15923321	2
Deletion	Chr9	19976659	19976660	1	OsKitaake09g166600
Deletion	Chr5	21608509	21608524	15
Deletion	Chr1	22933400	22933406	6
Deletion	Chr1	26693454	26693455	1
Deletion	Chr1	33188717	33188737	20
Deletion	Chr3	33287785	33288044	259
Deletion	Chr2	37072073	37072075	2	OsKitaake02g398400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6249850	6251105
Inversion	Chr8	6249853	6251111
Inversion	Chr12	18722997	19437538
Inversion	Chr12	18724775	19437546

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes