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| Mutant Information |
|---|
| Mutant Name | FN-210 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-210 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 44072604 | A-C | Hetero | INTRON | |
| SBS | Chr1 | 44139307 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 1212572 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14329566 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16877140 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 28575318 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3179726 | T-C | Homo | INTRON | |
| SBS | Chr4 | 24650234 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 26915356 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27701864 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 33776052 | C-A | Homo | INTRON | |
| SBS | Chr5 | 1301509 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 10599069 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 8272480 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16160360 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 18371074 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 796251 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 6233756 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 18802967 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 529314 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 3505621 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 23540744 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26146361 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 3297586 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7583257 | A-C | Hetero | INTRON | |
| SBS | Chr10 | 13957097 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15803142 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20247869 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 9577634 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 16379625 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 5585476 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7423903 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13308903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20678657 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Homo | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1160033 | 1160034 | 1 | OsKitaake09g006900 |
| Deletion | Chr8 | 6269242 | 6269423 | 181 | |
| Deletion | Chr12 | 11715032 | 11715517 | 485 | |
| Deletion | Chr5 | 15627001 | 15659000 | 31999 | OsKitaake05g119900 |
| Deletion | Chr11 | 24610001 | 24671000 | 60999 | 11 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 9520563 | 9520566 | 2 | |
| Insertion | Chr2 | 25139969 | 25139971 | 1 | |
| Insertion | Chr8 | 2510172 | 2510174 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 20283172 | Chr2 | 34561571 |