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| Mutant Information |
|---|
| Mutant Name | FN-211 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-211 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2836498 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11788859 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20463393 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 21018272 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29656933 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13123794 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 35615200 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 4609196 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 9566301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11087715 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33234028 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 12300266 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11278546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18374385 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2173134 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 18433478 | T-A | Homo | INTRON | |
| SBS | Chr10 | 4250390 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10174988 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 22892676 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 22892677 | T-G | Hetero | INTRON | |
| SBS | Chr11 | 808316 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2039643 | A-T | Homo | INTRON | |
| SBS | Chr11 | 8757993 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16106689 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16144926 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16258657 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 20573564 | G-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2173035 | 2173036 | 1 | |
| Deletion | Chr8 | 4277800 | 4277805 | 5 | |
| Deletion | Chr1 | 6212402 | 6212517 | 115 | OsKitaake01g078900 |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr7 | 11190056 | 11190058 | 2 | |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr11 | 22020428 | 22020433 | 5 | |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr12 | 25470060 | 25470061 | 1 | |
| Deletion | Chr4 | 31238749 | 31238750 | 1 | |
| Deletion | Chr1 | 32657770 | 32657774 | 4 | |
| Deletion | Chr1 | 34114955 | 34114957 | 2 | |
| Deletion | Chr2 | 35631214 | 35631215 | 1 | |
| Deletion | Chr1 | 37170001 | 37201000 | 30999 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 89620 | 89623 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 23966516 | 23987632 | |
| Inversion | Chr3 | 23966559 | 23987747 | |
| Inversion | Chr2 | 34330798 | 35104497 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 7792192 | Chr1 | 25862525 | |
| Translocation | Chr4 | 7792941 | Chr1 | 25862455 |