Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-212 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-212 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11918256 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 13035858 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 24609145 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 5944113 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 8869247 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 36448547 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 875050 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8722989 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13905547 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28616531 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19818362 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24401184 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 24401185 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27357382 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 5784371 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5821493 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 14660245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14718256 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 10460 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 16604850 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14942581 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 16773955 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 10779074 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 14033226 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 16455812 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19406488 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 22040878 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9279930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10820351 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11005900 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 230555 | 230556 | 1 | |
| Deletion | Chr11 | 5781418 | 5781419 | 1 | |
| Deletion | Chr9 | 7050867 | 7050868 | 1 | |
| Deletion | Chr8 | 9675787 | 9676042 | 255 | |
| Deletion | Chr1 | 10644112 | 10644114 | 2 | OsKitaake01g132100 |
| Deletion | Chr6 | 12195547 | 12195553 | 6 | |
| Deletion | Chr12 | 18339464 | 18339531 | 67 | |
| Deletion | Chr2 | 18759771 | 18759773 | 2 | |
| Deletion | Chr9 | 20309204 | 20309211 | 7 | |
| Deletion | Chr11 | 27541328 | 27541398 | 70 | |
| Deletion | Chr4 | 31394849 | 31394896 | 47 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 9944344 | 9944346 | 1 | |
| Insertion | Chr6 | 20641324 | 20641326 | 1 | |
| Insertion | Chr11 | 18736078 | 18736082 | 3 | |
| Insertion | Chr12 | 11707370 | 11707373 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 7522277 | 7864422 | OsKitaake11g084800 |
| Inversion | Chr11 | 8764833 | 9260967 | |
| Inversion | Chr11 | 10764626 | 10955124 | |
| Inversion | Chr11 | 10764634 | 10800303 | |
| Inversion | Chr11 | 26631766 | 27064175 |