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| Mutant Information |
|---|
| Mutant Name | FN-213 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-213 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6530501 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 32692776 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13289785 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 23955263 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 34620479 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 28882066 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 211073 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12895298 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15896937 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17615062 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 18285815 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 6782965 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13434554 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 21156983 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 29157422 | A-G | Homo | INTRON | |
| SBS | Chr9 | 2142756 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7750931 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 2093569 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9856322 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11356123 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26222356 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28500803 | G-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1347710 | 1347712 | 2 | |
| Deletion | Chr3 | 3731098 | 3731099 | 1 | |
| Deletion | Chr1 | 4728718 | 4728720 | 2 | |
| Deletion | Chr7 | 10463390 | 10463403 | 13 | |
| Deletion | Chr12 | 12723764 | 12723766 | 2 | |
| Deletion | Chr11 | 14510127 | 14510498 | 371 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr4 | 16997230 | 16997232 | 2 | |
| Deletion | Chr2 | 18854343 | 18854347 | 4 | |
| Deletion | Chr1 | 21024874 | 21024878 | 4 | |
| Deletion | Chr10 | 23464394 | 23464395 | 1 | OsKitaake10g200300 |
| Deletion | Chr12 | 25593200 | 25593202 | 2 | |
| Deletion | Chr8 | 27620245 | 27620251 | 6 | OsKitaake08g232300 |
| Deletion | Chr4 | 36835165 | 36835175 | 10 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 4297891 | 4297894 | 2 | |
| Insertion | Chr2 | 20929496 | 20929498 | 1 | OsKitaake02g202100  |
| Insertion | Chr6 | 27927979 | 27927982 | 2 | |
| Insertion | Chr9 | 5724851 | 5724854 | 2 | |
| Insertion | Chr12 | 25366955 | 25366958 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4184721 | 4691910 | 2 |
| Inversion | Chr2 | 4184727 | 4696493 | OsKitaake02g059100 |