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Mutant Information

Mutant Name	FN-214 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-214 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr3 7736017 T-A Hetero UTR_3_PRIME
SBS Chr3 17487886 G-T Hetero UTR_5_PRIME
SBS Chr3 17487887 A-C Hetero UTR_5_PRIME
SBS Chr3 26074471 C-G Homo INTERGENIC
SBS Chr4 17085127 A-G Hetero INTERGENIC
SBS Chr4 18286474 T-C Hetero INTERGENIC
SBS Chr4 21617140 C-T Homo SYNONYMOUS_CODING
SBS Chr4 32551732 G-A Homo SPLICE_SITE_REGION
SBS Chr5 1891952 G-A Hetero INTERGENIC
SBS Chr6 8650791 A-G Hetero INTERGENIC
SBS Chr6 26610126 T-A Hetero INTERGENIC
SBS Chr6 28029346 C-A Hetero INTERGENIC
SBS Chr9 8753437 C-A Hetero INTERGENIC
SBS Chr10 1328478 G-T Homo INTERGENIC
SBS Chr10 3663099 T-C Homo INTERGENIC
SBS Chr11 16072420 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 12823002 12823003 1
Deletion Chr5 14806007 14806009 2
Deletion Chr1 20444001 20453000 8999
Deletion Chr1 21562689 21562690 1
Deletion Chr1 21788083 21788089 6
Deletion Chr1 23646393 23646512 119
Deletion Chr3 27224102 27224104 2
Deletion Chr1 33219184 33219185 1
Deletion Chr1 42608052 42608294 242

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 3882413 3882421 7 OsKitaake06g053700
Insertion Chr12 24170313 24170318 4
Insertion Chr5 30228616 30228624 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 17213785 17594018 2
Inversion Chr6 20286584 20692106 OsKitaake06g185200
Inversion Chr6 20286589 20692106 OsKitaake06g185200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667991 Chr1 17284478
Translocation Chr9 17597923 Chr6 10555220 OsKitaake09g133000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr3	7736017	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	17487886	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	17487887	A-C	Hetero	UTR_5_PRIME
SBS	Chr3	26074471	C-G	Homo	INTERGENIC
SBS	Chr4	17085127	A-G	Hetero	INTERGENIC
SBS	Chr4	18286474	T-C	Hetero	INTERGENIC
SBS	Chr4	21617140	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	32551732	G-A	Homo	SPLICE_SITE_REGION
SBS	Chr5	1891952	G-A	Hetero	INTERGENIC
SBS	Chr6	8650791	A-G	Hetero	INTERGENIC
SBS	Chr6	26610126	T-A	Hetero	INTERGENIC
SBS	Chr6	28029346	C-A	Hetero	INTERGENIC
SBS	Chr9	8753437	C-A	Hetero	INTERGENIC
SBS	Chr10	1328478	G-T	Homo	INTERGENIC
SBS	Chr10	3663099	T-C	Homo	INTERGENIC
SBS	Chr11	16072420	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	12823002	12823003	1
Deletion	Chr5	14806007	14806009	2
Deletion	Chr1	20444001	20453000	8999
Deletion	Chr1	21562689	21562690	1
Deletion	Chr1	21788083	21788089	6
Deletion	Chr1	23646393	23646512	119
Deletion	Chr3	27224102	27224104	2
Deletion	Chr1	33219184	33219185	1
Deletion	Chr1	42608052	42608294	242

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17213785	17594018	2
Inversion	Chr6	20286584	20692106	OsKitaake06g185200
Inversion	Chr6	20286589	20692106	OsKitaake06g185200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes