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Mutant Information

Mutant Name	FN-215 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-215 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7213569 C-T Homo INTRON
SBS Chr1 11758112 A-T Hetero INTERGENIC
SBS Chr1 15643966 G-A Hetero INTERGENIC
SBS Chr1 20054732 G-C Hetero INTERGENIC
SBS Chr2 10925510 C-T Hetero INTERGENIC
SBS Chr2 15678693 C-T Hetero INTERGENIC
SBS Chr2 24551822 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g243800
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr2 32002235 G-T Hetero INTERGENIC
SBS Chr3 4965511 G-T Homo INTRON
SBS Chr3 6706928 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g095100
SBS Chr3 8259844 T-A Hetero INTERGENIC
SBS Chr3 15850330 G-A Hetero INTERGENIC
SBS Chr3 34216134 C-T Hetero INTRON
SBS Chr3 35931892 T-A Homo INTERGENIC
SBS Chr3 35931894 C-A Homo INTERGENIC
SBS Chr3 35931895 G-A Homo INTERGENIC
SBS Chr4 3609613 G-C Homo INTERGENIC
SBS Chr4 10088589 G-A Hetero INTERGENIC
SBS Chr4 10088599 T-A Hetero INTERGENIC
SBS Chr4 14414126 G-A Hetero INTERGENIC
SBS Chr4 17970667 C-G Hetero INTERGENIC
SBS Chr5 1888912 G-A Hetero INTERGENIC
SBS Chr5 7421121 C-T Hetero INTERGENIC
SBS Chr5 12179898 A-G Hetero INTERGENIC
SBS Chr5 12788185 G-A Hetero INTERGENIC
SBS Chr5 20537996 A-G Hetero INTERGENIC
SBS Chr5 20798021 G-T Hetero INTERGENIC
SBS Chr6 966496 C-T Homo INTRON
SBS Chr6 966497 C-T Homo INTRON
SBS Chr6 5513451 T-A Hetero INTERGENIC
SBS Chr6 14971783 C-T Hetero INTERGENIC
SBS Chr6 15129633 G-T Hetero INTERGENIC
SBS Chr7 1420108 G-T Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 15758429 G-A Hetero INTERGENIC
SBS Chr8 9939890 G-C Hetero INTERGENIC
SBS Chr8 28737539 A-T Hetero INTERGENIC
SBS Chr10 17409256 G-A Hetero INTERGENIC
SBS Chr10 18647223 C-A Hetero INTERGENIC
SBS Chr11 5002626 G-A Hetero INTERGENIC
SBS Chr11 5185010 T-C Hetero INTERGENIC
SBS Chr11 13193972 T-C Homo INTERGENIC
SBS Chr11 27565417 T-A Hetero INTERGENIC
SBS Chr12 2090387 G-A Hetero INTERGENIC
SBS Chr12 14527870 C-T Hetero INTERGENIC
SBS Chr12 17639448 A-G Homo INTERGENIC

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 537854 537863 9
Deletion Chr3 2960524 2960525 1
Deletion Chr2 3219524 3219527 3
Deletion Chr6 3437873 3437877 4 OsKitaake06g048200
Deletion Chr6 5837001 6063000 225999 36
Deletion Chr6 6065001 6147000 81999 11
Deletion Chr12 6356667 6356670 3
Deletion Chr6 7060001 7073000 12999 2
Deletion Chr4 9604209 9604213 4
Deletion Chr5 9617760 9617761 1
Deletion Chr7 10010001 10065000 54999 3
Deletion Chr11 10762662 10762679 17
Deletion Chr10 12610295 12610309 14
Deletion Chr9 12678160 12678161 1
Deletion Chr4 12842326 12842332 6
Deletion Chr11 13248211 13248215 4
Deletion Chr8 15085236 15085240 4
Deletion Chr3 15648306 15648307 1
Deletion Chr6 15979065 15979066 1
Deletion Chr4 16987001 17015000 27999 OsKitaake04g083200
Deletion Chr2 19930001 20040000 109999 13
Deletion Chr2 20825976 20825985 9
Deletion Chr6 22677753 22677756 3
Deletion Chr5 23047111 23047122 11
Deletion Chr4 26770335 26770336 1
Deletion Chr6 27094315 27094331 16
Deletion Chr6 28008749 28008751 2
Deletion Chr11 28635450 28635457 7
Deletion Chr3 29863066 29863071 5 OsKitaake03g312200
Deletion Chr4 30000342 30000343 1 OsKitaake04g230300
Deletion Chr1 32384116 32384118 2 OsKitaake01g327300
Deletion Chr4 34978766 34978779 13
Deletion Chr1 37704465 37704473 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 17706296 17706299 2
Insertion Chr12 25006273 25006276 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16047918 16794212 OsKitaake06g158400
Inversion Chr6 16047923 16794250 OsKitaake06g158400
Inversion Chr4 16523207 17010467
Inversion Chr4 33515558 34486117
Inversion Chr4 33515562 34486118

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7213569	C-T	Homo	INTRON
SBS	Chr1	11758112	A-T	Hetero	INTERGENIC
SBS	Chr1	15643966	G-A	Hetero	INTERGENIC
SBS	Chr1	20054732	G-C	Hetero	INTERGENIC
SBS	Chr2	10925510	C-T	Hetero	INTERGENIC
SBS	Chr2	15678693	C-T	Hetero	INTERGENIC
SBS	Chr2	24551822	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g243800
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr2	32002235	G-T	Hetero	INTERGENIC
SBS	Chr3	4965511	G-T	Homo	INTRON
SBS	Chr3	6706928	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g095100
SBS	Chr3	8259844	T-A	Hetero	INTERGENIC
SBS	Chr3	15850330	G-A	Hetero	INTERGENIC
SBS	Chr3	34216134	C-T	Hetero	INTRON
SBS	Chr3	35931892	T-A	Homo	INTERGENIC
SBS	Chr3	35931894	C-A	Homo	INTERGENIC
SBS	Chr3	35931895	G-A	Homo	INTERGENIC
SBS	Chr4	3609613	G-C	Homo	INTERGENIC
SBS	Chr4	10088589	G-A	Hetero	INTERGENIC
SBS	Chr4	10088599	T-A	Hetero	INTERGENIC
SBS	Chr4	14414126	G-A	Hetero	INTERGENIC
SBS	Chr4	17970667	C-G	Hetero	INTERGENIC
SBS	Chr5	1888912	G-A	Hetero	INTERGENIC
SBS	Chr5	7421121	C-T	Hetero	INTERGENIC
SBS	Chr5	12179898	A-G	Hetero	INTERGENIC
SBS	Chr5	12788185	G-A	Hetero	INTERGENIC
SBS	Chr5	20537996	A-G	Hetero	INTERGENIC
SBS	Chr5	20798021	G-T	Hetero	INTERGENIC
SBS	Chr6	966496	C-T	Homo	INTRON
SBS	Chr6	966497	C-T	Homo	INTRON
SBS	Chr6	5513451	T-A	Hetero	INTERGENIC
SBS	Chr6	14971783	C-T	Hetero	INTERGENIC
SBS	Chr6	15129633	G-T	Hetero	INTERGENIC
SBS	Chr7	1420108	G-T	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	15758429	G-A	Hetero	INTERGENIC
SBS	Chr8	9939890	G-C	Hetero	INTERGENIC
SBS	Chr8	28737539	A-T	Hetero	INTERGENIC
SBS	Chr10	17409256	G-A	Hetero	INTERGENIC
SBS	Chr10	18647223	C-A	Hetero	INTERGENIC
SBS	Chr11	5002626	G-A	Hetero	INTERGENIC
SBS	Chr11	5185010	T-C	Hetero	INTERGENIC
SBS	Chr11	13193972	T-C	Homo	INTERGENIC
SBS	Chr11	27565417	T-A	Hetero	INTERGENIC
SBS	Chr12	2090387	G-A	Hetero	INTERGENIC
SBS	Chr12	14527870	C-T	Hetero	INTERGENIC
SBS	Chr12	17639448	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	537854	537863	9
Deletion	Chr3	2960524	2960525	1
Deletion	Chr2	3219524	3219527	3
Deletion	Chr6	3437873	3437877	4	OsKitaake06g048200
Deletion	Chr6	5837001	6063000	225999	36
Deletion	Chr6	6065001	6147000	81999	11
Deletion	Chr12	6356667	6356670	3
Deletion	Chr6	7060001	7073000	12999	2
Deletion	Chr4	9604209	9604213	4
Deletion	Chr5	9617760	9617761	1
Deletion	Chr7	10010001	10065000	54999	3
Deletion	Chr11	10762662	10762679	17
Deletion	Chr10	12610295	12610309	14
Deletion	Chr9	12678160	12678161	1
Deletion	Chr4	12842326	12842332	6
Deletion	Chr11	13248211	13248215	4
Deletion	Chr8	15085236	15085240	4
Deletion	Chr3	15648306	15648307	1
Deletion	Chr6	15979065	15979066	1
Deletion	Chr4	16987001	17015000	27999	OsKitaake04g083200
Deletion	Chr2	19930001	20040000	109999	13
Deletion	Chr2	20825976	20825985	9
Deletion	Chr6	22677753	22677756	3
Deletion	Chr5	23047111	23047122	11
Deletion	Chr4	26770335	26770336	1
Deletion	Chr6	27094315	27094331	16
Deletion	Chr6	28008749	28008751	2
Deletion	Chr11	28635450	28635457	7
Deletion	Chr3	29863066	29863071	5	OsKitaake03g312200
Deletion	Chr4	30000342	30000343	1	OsKitaake04g230300
Deletion	Chr1	32384116	32384118	2	OsKitaake01g327300
Deletion	Chr4	34978766	34978779	13
Deletion	Chr1	37704465	37704473	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16047918	16794212	OsKitaake06g158400
Inversion	Chr6	16047923	16794250	OsKitaake06g158400
Inversion	Chr4	16523207	17010467
Inversion	Chr4	33515558	34486117
Inversion	Chr4	33515562	34486118

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes