Search Kitaake

Mutant Information

Mutant Name	FN-216 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-216 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4970192 C-T Homo UTR_3_PRIME
SBS Chr1 6420740 A-T Homo INTERGENIC
SBS Chr1 6465316 T-A Homo INTRON
SBS Chr1 18022418 T-A Hetero INTERGENIC
SBS Chr1 23349949 G-T Hetero INTERGENIC
SBS Chr1 27490285 G-A Hetero INTRON
SBS Chr1 31859654 C-G Hetero INTERGENIC
SBS Chr2 12640645 G-A Hetero INTERGENIC
SBS Chr3 2847804 G-T Homo INTERGENIC
SBS Chr3 8816998 C-T Hetero INTERGENIC
SBS Chr3 19262818 A-G Hetero INTERGENIC
SBS Chr3 31649173 T-C Hetero UTR_3_PRIME
SBS Chr4 8418171 G-C Hetero INTERGENIC
SBS Chr4 9980170 G-A Hetero INTERGENIC
SBS Chr4 11552802 G-A Hetero INTERGENIC
SBS Chr4 21371118 T-C Hetero INTERGENIC
SBS Chr4 23367683 G-A Hetero UTR_3_PRIME
SBS Chr4 23367684 T-A Hetero UTR_3_PRIME
SBS Chr5 4394077 A-G Hetero INTERGENIC
SBS Chr5 12175571 T-G Homo INTERGENIC
SBS Chr6 9984131 G-A Hetero INTERGENIC
SBS Chr6 24399722 C-T Hetero INTERGENIC
SBS Chr7 3276766 C-T Hetero INTERGENIC
SBS Chr8 24716647 G-A Homo INTERGENIC
SBS Chr9 1901080 T-C Homo INTERGENIC
SBS Chr9 10920364 T-A Hetero INTERGENIC
SBS Chr9 20096540 A-T Hetero INTERGENIC
SBS Chr10 8845871 G-A Hetero INTERGENIC
SBS Chr10 16734771 G-A Homo INTERGENIC
SBS Chr11 4595324 G-C Hetero INTERGENIC
SBS Chr11 8742671 A-T Hetero INTERGENIC
SBS Chr11 12110521 T-G Hetero INTERGENIC
SBS Chr11 28174882 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1464873 1464874 1
Deletion Chr2 2140160 2140163 3
Deletion Chr7 2264689 2264694 5
Deletion Chr9 2744768 2744769 1
Deletion Chr1 2788794 2788795 1
Deletion Chr7 3979521 3979522 1
Deletion Chr11 6167510 6167511 1
Deletion Chr5 8569419 8569420 1
Deletion Chr1 9217523 9217529 6
Deletion Chr1 9664754 9664756 2
Deletion Chr11 13183001 13264000 80999
Deletion Chr6 20204336 20204384 48
Deletion Chr6 23444694 23444695 1
Deletion Chr6 24237552 24237554 2
Deletion Chr6 24702948 24702949 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24362816 24362819 2
Insertion Chr5 13270312 13270315 2
Insertion Chr1 12807083 12807086 2
Insertion Chr6 6994 6996 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084122 Chr3 19275528

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4970192	C-T	Homo	UTR_3_PRIME
SBS	Chr1	6420740	A-T	Homo	INTERGENIC
SBS	Chr1	6465316	T-A	Homo	INTRON
SBS	Chr1	18022418	T-A	Hetero	INTERGENIC
SBS	Chr1	23349949	G-T	Hetero	INTERGENIC
SBS	Chr1	27490285	G-A	Hetero	INTRON
SBS	Chr1	31859654	C-G	Hetero	INTERGENIC
SBS	Chr2	12640645	G-A	Hetero	INTERGENIC
SBS	Chr3	2847804	G-T	Homo	INTERGENIC
SBS	Chr3	8816998	C-T	Hetero	INTERGENIC
SBS	Chr3	19262818	A-G	Hetero	INTERGENIC
SBS	Chr3	31649173	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	8418171	G-C	Hetero	INTERGENIC
SBS	Chr4	9980170	G-A	Hetero	INTERGENIC
SBS	Chr4	11552802	G-A	Hetero	INTERGENIC
SBS	Chr4	21371118	T-C	Hetero	INTERGENIC
SBS	Chr4	23367683	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	23367684	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	4394077	A-G	Hetero	INTERGENIC
SBS	Chr5	12175571	T-G	Homo	INTERGENIC
SBS	Chr6	9984131	G-A	Hetero	INTERGENIC
SBS	Chr6	24399722	C-T	Hetero	INTERGENIC
SBS	Chr7	3276766	C-T	Hetero	INTERGENIC
SBS	Chr8	24716647	G-A	Homo	INTERGENIC
SBS	Chr9	1901080	T-C	Homo	INTERGENIC
SBS	Chr9	10920364	T-A	Hetero	INTERGENIC
SBS	Chr9	20096540	A-T	Hetero	INTERGENIC
SBS	Chr10	8845871	G-A	Hetero	INTERGENIC
SBS	Chr10	16734771	G-A	Homo	INTERGENIC
SBS	Chr11	4595324	G-C	Hetero	INTERGENIC
SBS	Chr11	8742671	A-T	Hetero	INTERGENIC
SBS	Chr11	12110521	T-G	Hetero	INTERGENIC
SBS	Chr11	28174882	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1464873	1464874	1
Deletion	Chr2	2140160	2140163	3
Deletion	Chr7	2264689	2264694	5
Deletion	Chr9	2744768	2744769	1
Deletion	Chr1	2788794	2788795	1
Deletion	Chr7	3979521	3979522	1
Deletion	Chr11	6167510	6167511	1
Deletion	Chr5	8569419	8569420	1
Deletion	Chr1	9217523	9217529	6
Deletion	Chr1	9664754	9664756	2
Deletion	Chr11	13183001	13264000	80999
Deletion	Chr6	20204336	20204384	48
Deletion	Chr6	23444694	23444695	1
Deletion	Chr6	24237552	24237554	2
Deletion	Chr6	24702948	24702949	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5084122	Chr3	19275528

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes