Search Kitaake

Mutant Information

Mutant Name	FN-217 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-217 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1447765 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g018000
SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 8268613 C-T Hetero INTERGENIC
SBS Chr1 9162252 T-C Homo INTERGENIC
SBS Chr1 28257678 C-G Homo INTERGENIC
SBS Chr1 34468425 T-A Homo INTRON
SBS Chr2 3486946 A-C Hetero INTRON
SBS Chr2 5947670 C-T Homo SYNONYMOUS_CODING
SBS Chr2 6964100 C-T Hetero INTERGENIC
SBS Chr2 9340413 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 19841058 C-T Hetero INTERGENIC
SBS Chr2 28811660 C-T Hetero INTERGENIC
SBS Chr3 13125670 T-G Hetero UTR_5_PRIME
SBS Chr4 33465205 C-T Hetero INTERGENIC
SBS Chr5 6287208 T-A Homo INTERGENIC
SBS Chr6 2466160 C-T Hetero INTERGENIC
SBS Chr6 4103543 A-T Hetero INTRON
SBS Chr6 7662287 T-A Homo INTERGENIC
SBS Chr6 7662289 G-A Homo INTERGENIC
SBS Chr6 29982312 T-C Hetero INTERGENIC
SBS Chr7 6420979 A-G Hetero INTERGENIC
SBS Chr7 17388471 G-T Homo INTERGENIC
SBS Chr7 17388472 A-T Homo INTERGENIC
SBS Chr7 17703353 T-C Homo INTERGENIC
SBS Chr7 17723983 A-T Homo INTRON
SBS Chr8 20227544 C-G Hetero INTERGENIC
SBS Chr8 22864469 G-A Hetero INTERGENIC
SBS Chr8 24497254 G-C Hetero UTR_5_PRIME
SBS Chr8 28882877 T-A Hetero INTRON
SBS Chr9 2860748 C-T Hetero INTERGENIC
SBS Chr9 10945876 A-T Homo INTERGENIC
SBS Chr9 14156354 C-T Hetero INTERGENIC
SBS Chr9 17444203 T-A Homo INTERGENIC
SBS Chr10 2887420 T-C Homo INTERGENIC
SBS Chr11 3698896 C-T Homo INTRON
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr11 10053609 G-A Hetero INTERGENIC
SBS Chr11 18362121 G-A Homo INTERGENIC
SBS Chr11 20355957 G-C Homo INTRON
SBS Chr12 2611486 T-C Homo INTERGENIC
SBS Chr12 7902292 G-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 900492 900493 1 OsKitaake05g011100
Deletion Chr1 2225908 2225919 11
Deletion Chr1 4915942 4915946 4
Deletion Chr4 10452163 10452318 155
Deletion Chr12 11674297 11674298 1
Deletion Chr11 11790169 11790171 2
Deletion Chr3 14086189 14086191 2 OsKitaake03g184200
Deletion Chr1 19918422 19918429 7
Deletion Chr3 20052841 20052996 155
Deletion Chr9 20853770 20853780 10
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr1 27715259 27715260 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22964776 22964779 2
Insertion Chr6 20706102 20706106 3 OsKitaake06g185300
Insertion Chr8 16521293 16521296 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1447765	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g018000
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	8268613	C-T	Hetero	INTERGENIC
SBS	Chr1	9162252	T-C	Homo	INTERGENIC
SBS	Chr1	28257678	C-G	Homo	INTERGENIC
SBS	Chr1	34468425	T-A	Homo	INTRON
SBS	Chr2	3486946	A-C	Hetero	INTRON
SBS	Chr2	5947670	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	6964100	C-T	Hetero	INTERGENIC
SBS	Chr2	9340413	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	19841058	C-T	Hetero	INTERGENIC
SBS	Chr2	28811660	C-T	Hetero	INTERGENIC
SBS	Chr3	13125670	T-G	Hetero	UTR_5_PRIME
SBS	Chr4	33465205	C-T	Hetero	INTERGENIC
SBS	Chr5	6287208	T-A	Homo	INTERGENIC
SBS	Chr6	2466160	C-T	Hetero	INTERGENIC
SBS	Chr6	4103543	A-T	Hetero	INTRON
SBS	Chr6	7662287	T-A	Homo	INTERGENIC
SBS	Chr6	7662289	G-A	Homo	INTERGENIC
SBS	Chr6	29982312	T-C	Hetero	INTERGENIC
SBS	Chr7	6420979	A-G	Hetero	INTERGENIC
SBS	Chr7	17388471	G-T	Homo	INTERGENIC
SBS	Chr7	17388472	A-T	Homo	INTERGENIC
SBS	Chr7	17703353	T-C	Homo	INTERGENIC
SBS	Chr7	17723983	A-T	Homo	INTRON
SBS	Chr8	20227544	C-G	Hetero	INTERGENIC
SBS	Chr8	22864469	G-A	Hetero	INTERGENIC
SBS	Chr8	24497254	G-C	Hetero	UTR_5_PRIME
SBS	Chr8	28882877	T-A	Hetero	INTRON
SBS	Chr9	2860748	C-T	Hetero	INTERGENIC
SBS	Chr9	10945876	A-T	Homo	INTERGENIC
SBS	Chr9	14156354	C-T	Hetero	INTERGENIC
SBS	Chr9	17444203	T-A	Homo	INTERGENIC
SBS	Chr10	2887420	T-C	Homo	INTERGENIC
SBS	Chr11	3698896	C-T	Homo	INTRON
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr11	10053609	G-A	Hetero	INTERGENIC
SBS	Chr11	18362121	G-A	Homo	INTERGENIC
SBS	Chr11	20355957	G-C	Homo	INTRON
SBS	Chr12	2611486	T-C	Homo	INTERGENIC
SBS	Chr12	7902292	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	900492	900493	1	OsKitaake05g011100
Deletion	Chr1	2225908	2225919	11
Deletion	Chr1	4915942	4915946	4
Deletion	Chr4	10452163	10452318	155
Deletion	Chr12	11674297	11674298	1
Deletion	Chr11	11790169	11790171	2
Deletion	Chr3	14086189	14086191	2	OsKitaake03g184200
Deletion	Chr1	19918422	19918429	7
Deletion	Chr3	20052841	20052996	155
Deletion	Chr9	20853770	20853780	10
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr1	27715259	27715260	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes