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Mutant Information

Mutant Name	FN-218 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-218 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27115906 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g263600
SBS Chr2 34539860 G-A Homo INTERGENIC
SBS Chr3 4236594 C-T Hetero INTRON
SBS Chr3 16841129 G-A Hetero INTERGENIC
SBS Chr3 24950236 A-T Hetero INTERGENIC
SBS Chr3 32339794 G-C Hetero INTERGENIC
SBS Chr4 10237104 C-T Hetero INTERGENIC
SBS Chr4 27034859 A-G Homo INTERGENIC
SBS Chr4 30257693 A-G Hetero INTERGENIC
SBS Chr4 33512414 C-A Homo INTERGENIC
SBS Chr5 15347570 G-A Hetero INTERGENIC
SBS Chr5 16923520 T-A Hetero INTERGENIC
SBS Chr5 20579487 G-A Homo INTERGENIC
SBS Chr5 22769373 G-T Hetero INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 4518502 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 10565638 C-T Hetero INTRON
SBS Chr6 30897277 G-A Hetero INTERGENIC
SBS Chr7 4554718 C-T Hetero INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 11345482 G-A Hetero INTERGENIC
SBS Chr7 20454042 C-A Hetero INTERGENIC
SBS Chr7 26081150 C-T Hetero INTERGENIC
SBS Chr7 26222293 T-C Homo INTRON
SBS Chr8 1307459 C-T Hetero INTERGENIC
SBS Chr8 2577412 C-T Hetero INTERGENIC
SBS Chr8 5884670 C-A Hetero INTERGENIC
SBS Chr8 9818159 G-C Hetero INTERGENIC
SBS Chr8 10934617 T-A Hetero UTR_3_PRIME
SBS Chr8 20111079 C-A Hetero INTERGENIC
SBS Chr9 3472432 G-A Hetero INTERGENIC
SBS Chr9 7060859 T-C Hetero INTERGENIC
SBS Chr9 9744107 G-C Hetero UTR_3_PRIME
SBS Chr9 14377577 G-T Homo INTRON
SBS Chr10 1395868 G-C Hetero INTERGENIC
SBS Chr10 2921428 G-A Hetero INTERGENIC
SBS Chr10 10591181 C-T Hetero INTERGENIC
SBS Chr10 12494374 G-A Homo INTERGENIC
SBS Chr12 2225861 C-G Hetero INTERGENIC
SBS Chr12 7773705 C-T Homo INTERGENIC
SBS Chr12 17212438 A-T Hetero INTERGENIC
SBS Chr12 21268317 C-G Homo INTERGENIC
SBS Chr12 21268320 A-G Homo INTERGENIC
SBS Chr12 21268324 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 471144 471145 1
Deletion Chr5 2412024 2412026 2
Deletion Chr3 4234561 4234568 7
Deletion Chr6 5452295 5452303 8
Deletion Chr8 5963876 5963888 12
Deletion Chr10 9444962 9444970 8 OsKitaake10g054900
Deletion Chr7 9930418 9930419 1
Deletion Chr6 10601025 10601029 4
Deletion Chr10 14148354 14148369 15
Deletion Chr7 18355857 18355859 2
Deletion Chr1 21106618 21106620 2
Deletion Chr10 21548822 21548823 1
Deletion Chr6 24093924 24093927 3 OsKitaake06g213400
Deletion Chr4 24223436 24223445 9
Deletion Chr1 26184340 26184344 4
Deletion Chr3 31345008 31345009 1 OsKitaake03g330200
Deletion Chr4 35671527 35671528 1 OsKitaake04g304700
Deletion Chr2 36483885 36483887 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28290054 28290057 2
Insertion Chr5 16987625 16987630 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 3275457 3650569
Inversion Chr9 3275473 3650572
Inversion Chr4 18397274 18943764 OsKitaake04g092500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 4243633 Chr4 31747186 OsKitaake04g251500
Translocation Chr9 4243644 Chr4 31746453 OsKitaake04g251500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27115906	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g263600
SBS	Chr2	34539860	G-A	Homo	INTERGENIC
SBS	Chr3	4236594	C-T	Hetero	INTRON
SBS	Chr3	16841129	G-A	Hetero	INTERGENIC
SBS	Chr3	24950236	A-T	Hetero	INTERGENIC
SBS	Chr3	32339794	G-C	Hetero	INTERGENIC
SBS	Chr4	10237104	C-T	Hetero	INTERGENIC
SBS	Chr4	27034859	A-G	Homo	INTERGENIC
SBS	Chr4	30257693	A-G	Hetero	INTERGENIC
SBS	Chr4	33512414	C-A	Homo	INTERGENIC
SBS	Chr5	15347570	G-A	Hetero	INTERGENIC
SBS	Chr5	16923520	T-A	Hetero	INTERGENIC
SBS	Chr5	20579487	G-A	Homo	INTERGENIC
SBS	Chr5	22769373	G-T	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	4518502	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10565638	C-T	Hetero	INTRON
SBS	Chr6	30897277	G-A	Hetero	INTERGENIC
SBS	Chr7	4554718	C-T	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	11345482	G-A	Hetero	INTERGENIC
SBS	Chr7	20454042	C-A	Hetero	INTERGENIC
SBS	Chr7	26081150	C-T	Hetero	INTERGENIC
SBS	Chr7	26222293	T-C	Homo	INTRON
SBS	Chr8	1307459	C-T	Hetero	INTERGENIC
SBS	Chr8	2577412	C-T	Hetero	INTERGENIC
SBS	Chr8	5884670	C-A	Hetero	INTERGENIC
SBS	Chr8	9818159	G-C	Hetero	INTERGENIC
SBS	Chr8	10934617	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	20111079	C-A	Hetero	INTERGENIC
SBS	Chr9	3472432	G-A	Hetero	INTERGENIC
SBS	Chr9	7060859	T-C	Hetero	INTERGENIC
SBS	Chr9	9744107	G-C	Hetero	UTR_3_PRIME
SBS	Chr9	14377577	G-T	Homo	INTRON
SBS	Chr10	1395868	G-C	Hetero	INTERGENIC
SBS	Chr10	2921428	G-A	Hetero	INTERGENIC
SBS	Chr10	10591181	C-T	Hetero	INTERGENIC
SBS	Chr10	12494374	G-A	Homo	INTERGENIC
SBS	Chr12	2225861	C-G	Hetero	INTERGENIC
SBS	Chr12	7773705	C-T	Homo	INTERGENIC
SBS	Chr12	17212438	A-T	Hetero	INTERGENIC
SBS	Chr12	21268317	C-G	Homo	INTERGENIC
SBS	Chr12	21268320	A-G	Homo	INTERGENIC
SBS	Chr12	21268324	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	471144	471145	1
Deletion	Chr5	2412024	2412026	2
Deletion	Chr3	4234561	4234568	7
Deletion	Chr6	5452295	5452303	8
Deletion	Chr8	5963876	5963888	12
Deletion	Chr10	9444962	9444970	8	OsKitaake10g054900
Deletion	Chr7	9930418	9930419	1
Deletion	Chr6	10601025	10601029	4
Deletion	Chr10	14148354	14148369	15
Deletion	Chr7	18355857	18355859	2
Deletion	Chr1	21106618	21106620	2
Deletion	Chr10	21548822	21548823	1
Deletion	Chr6	24093924	24093927	3	OsKitaake06g213400
Deletion	Chr4	24223436	24223445	9
Deletion	Chr1	26184340	26184344	4
Deletion	Chr3	31345008	31345009	1	OsKitaake03g330200
Deletion	Chr4	35671527	35671528	1	OsKitaake04g304700
Deletion	Chr2	36483885	36483887	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3275457	3650569
Inversion	Chr9	3275473	3650572
Inversion	Chr4	18397274	18943764	OsKitaake04g092500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes