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Mutant Information

Mutant Name	FN-219 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-219 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6802267 A-T Hetero INTERGENIC
SBS Chr1 19163179 G-T Hetero INTERGENIC
SBS Chr1 27494247 G-A Hetero INTERGENIC
SBS Chr1 31547847 T-G Hetero INTERGENIC
SBS Chr2 3475413 G-A Hetero INTERGENIC
SBS Chr2 32703359 C-A Homo INTERGENIC
SBS Chr3 12303915 C-T Hetero INTERGENIC
SBS Chr3 21398650 C-T Hetero INTERGENIC
SBS Chr3 31262712 A-G Homo INTERGENIC
SBS Chr4 19480024 T-C Hetero INTERGENIC
SBS Chr4 35111908 G-T Hetero INTRON
SBS Chr5 2954892 G-A Hetero INTERGENIC
SBS Chr5 10555569 C-T Hetero INTERGENIC
SBS Chr5 26346693 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g232800
SBS Chr6 7170598 A-G Homo INTERGENIC
SBS Chr6 28393162 T-G Homo INTERGENIC
SBS Chr6 28710676 A-G Homo INTERGENIC
SBS Chr7 2839756 A-T Hetero INTERGENIC
SBS Chr7 9791412 G-A Homo INTERGENIC
SBS Chr7 23686947 A-T Hetero INTERGENIC
SBS Chr7 24850364 A-G Homo INTRON
SBS Chr8 5361236 A-T Homo INTERGENIC
SBS Chr8 6527200 T-C Hetero INTERGENIC
SBS Chr8 9113471 C-G Homo INTERGENIC
SBS Chr9 14204727 G-T Hetero INTERGENIC
SBS Chr10 11051678 C-T Homo INTERGENIC
SBS Chr10 12528327 C-T Homo INTERGENIC
SBS Chr10 17959195 C-A Hetero INTERGENIC
SBS Chr10 24002988 G-A Hetero INTERGENIC
SBS Chr11 9218380 A-T Homo INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr11 25080910 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g203025
SBS Chr12 4975469 G-T Hetero INTRON
SBS Chr12 13378804 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 360487 360494 7
Deletion Chr12 1097883 1097886 3
Deletion Chr8 2064267 2064270 3
Deletion Chr11 5552313 5552315 2
Deletion Chr1 11352445 11352569 124
Deletion Chr8 11587067 11587069 2
Deletion Chr9 12154206 12154208 2 OsKitaake09g078700
Deletion Chr3 13430534 13430536 2 OsKitaake03g179400
Deletion Chr5 16002768 16002874 106
Deletion Chr9 16140964 16140966 2
Deletion Chr2 16283309 16283311 2
Deletion Chr8 16752716 16752718 2
Deletion Chr11 18093947 18094315 368
Deletion Chr5 18304308 18304309 1
Deletion Chr8 20641971 20642062 91 OsKitaake08g153600
Deletion Chr9 22755389 22755390 1
Deletion Chr6 23639425 23639426 1
Deletion Chr1 24915873 24915876 3
Deletion Chr1 26715001 26749000 33999 4
Deletion Chr4 31656570 31656571 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 24182797 24182800 2
Insertion Chr8 12245496 12245499 2
Insertion Chr3 32330345 32330347 1
Insertion Chr6 15670159 15670161 1 OsKitaake06g152800
Insertion Chr10 8707033 8707035 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3422444 Chr1 26750351
Translocation Chr10 3422445 Chr1 26750075
Translocation Chr9 12577108 Chr1 16428022

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6802267	A-T	Hetero	INTERGENIC
SBS	Chr1	19163179	G-T	Hetero	INTERGENIC
SBS	Chr1	27494247	G-A	Hetero	INTERGENIC
SBS	Chr1	31547847	T-G	Hetero	INTERGENIC
SBS	Chr2	3475413	G-A	Hetero	INTERGENIC
SBS	Chr2	32703359	C-A	Homo	INTERGENIC
SBS	Chr3	12303915	C-T	Hetero	INTERGENIC
SBS	Chr3	21398650	C-T	Hetero	INTERGENIC
SBS	Chr3	31262712	A-G	Homo	INTERGENIC
SBS	Chr4	19480024	T-C	Hetero	INTERGENIC
SBS	Chr4	35111908	G-T	Hetero	INTRON
SBS	Chr5	2954892	G-A	Hetero	INTERGENIC
SBS	Chr5	10555569	C-T	Hetero	INTERGENIC
SBS	Chr5	26346693	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g232800
SBS	Chr6	7170598	A-G	Homo	INTERGENIC
SBS	Chr6	28393162	T-G	Homo	INTERGENIC
SBS	Chr6	28710676	A-G	Homo	INTERGENIC
SBS	Chr7	2839756	A-T	Hetero	INTERGENIC
SBS	Chr7	9791412	G-A	Homo	INTERGENIC
SBS	Chr7	23686947	A-T	Hetero	INTERGENIC
SBS	Chr7	24850364	A-G	Homo	INTRON
SBS	Chr8	5361236	A-T	Homo	INTERGENIC
SBS	Chr8	6527200	T-C	Hetero	INTERGENIC
SBS	Chr8	9113471	C-G	Homo	INTERGENIC
SBS	Chr9	14204727	G-T	Hetero	INTERGENIC
SBS	Chr10	11051678	C-T	Homo	INTERGENIC
SBS	Chr10	12528327	C-T	Homo	INTERGENIC
SBS	Chr10	17959195	C-A	Hetero	INTERGENIC
SBS	Chr10	24002988	G-A	Hetero	INTERGENIC
SBS	Chr11	9218380	A-T	Homo	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr11	25080910	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g203025
SBS	Chr12	4975469	G-T	Hetero	INTRON
SBS	Chr12	13378804	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	360487	360494	7
Deletion	Chr12	1097883	1097886	3
Deletion	Chr8	2064267	2064270	3
Deletion	Chr11	5552313	5552315	2
Deletion	Chr1	11352445	11352569	124
Deletion	Chr8	11587067	11587069	2
Deletion	Chr9	12154206	12154208	2	OsKitaake09g078700
Deletion	Chr3	13430534	13430536	2	OsKitaake03g179400
Deletion	Chr5	16002768	16002874	106
Deletion	Chr9	16140964	16140966	2
Deletion	Chr2	16283309	16283311	2
Deletion	Chr8	16752716	16752718	2
Deletion	Chr11	18093947	18094315	368
Deletion	Chr5	18304308	18304309	1
Deletion	Chr8	20641971	20642062	91	OsKitaake08g153600
Deletion	Chr9	22755389	22755390	1
Deletion	Chr6	23639425	23639426	1
Deletion	Chr1	24915873	24915876	3
Deletion	Chr1	26715001	26749000	33999	4
Deletion	Chr4	31656570	31656571	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3422444	Chr1	26750351
Translocation	Chr10	3422445	Chr1	26750075
Translocation	Chr9	12577108	Chr1	16428022

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes