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Mutant Information

Mutant Name	FN-22 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-22 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4101929 G-C Hetero INTERGENIC
SBS Chr1 10456556 C-G Hetero INTERGENIC
SBS Chr1 22922287 A-G Homo INTRON
SBS Chr1 23964194 G-T Hetero INTERGENIC
SBS Chr2 24155461 G-A Hetero INTRON
SBS Chr2 30354538 C-T Hetero INTERGENIC
SBS Chr2 31099134 A-G Hetero INTERGENIC
SBS Chr3 10864835 T-C Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 30883731 C-T Homo INTERGENIC
SBS Chr3 34211834 A-G Homo UTR_5_PRIME
SBS Chr4 7902090 G-A Hetero INTERGENIC
SBS Chr5 7889816 T-G Hetero INTERGENIC
SBS Chr5 13865962 T-A Homo INTERGENIC
SBS Chr5 16192533 C-T Homo UTR_3_PRIME
SBS Chr5 17580329 G-A Homo INTERGENIC
SBS Chr5 18937440 T-A Hetero INTERGENIC
SBS Chr5 22410037 G-A Hetero INTERGENIC
SBS Chr5 28315133 C-A Homo INTERGENIC
SBS Chr6 6925693 G-T Homo UTR_3_PRIME
SBS Chr6 13881739 T-A Hetero INTERGENIC
SBS Chr6 18481731 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g169003
SBS Chr6 18682900 T-C Hetero INTERGENIC
SBS Chr7 1033298 A-T Homo INTRON
SBS Chr8 2262090 G-A Hetero INTERGENIC
SBS Chr8 5865810 G-T Hetero INTERGENIC
SBS Chr8 11405589 C-G Hetero INTERGENIC
SBS Chr8 11532957 A-T Hetero INTERGENIC
SBS Chr9 3079665 C-G Homo UTR_3_PRIME
SBS Chr10 13174625 T-A Homo INTERGENIC
SBS Chr10 13174627 G-A Homo INTERGENIC
SBS Chr10 13174629 C-A Homo INTERGENIC
SBS Chr11 10173265 T-C Hetero INTERGENIC
SBS Chr12 11963907 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 379738 379745 7
Deletion Chr5 2978906 2978909 3 OsKitaake05g034600
Deletion Chr1 3529668 3529681 13
Deletion Chr12 3840934 3840935 1
Deletion Chr2 4546438 4546440 2
Deletion Chr1 6079399 6079400 1
Deletion Chr11 7237156 7237168 12
Deletion Chr7 12641553 12641554 1
Deletion Chr1 18092124 18092126 2
Deletion Chr7 22836677 22836686 9
Deletion Chr1 23069332 23069343 11
Deletion Chr11 23316260 23316261 1
Deletion Chr6 24663085 24663086 1
Deletion Chr11 27381104 27381106 2
Deletion Chr7 27480580 27480706 126
Deletion Chr5 28235541 28235546 5
Deletion Chr3 30748554 30748555 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44154733 44154735 1
Insertion Chr3 3508170 3508175 4
Insertion Chr10 4492991 4492994 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 17289949 17738465
Inversion Chr2 17289954 17738462

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12108904 Chr3 2824620 OsKitaake08g105600
Translocation Chr5 22575117 Chr3 10338065

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4101929	G-C	Hetero	INTERGENIC
SBS	Chr1	10456556	C-G	Hetero	INTERGENIC
SBS	Chr1	22922287	A-G	Homo	INTRON
SBS	Chr1	23964194	G-T	Hetero	INTERGENIC
SBS	Chr2	24155461	G-A	Hetero	INTRON
SBS	Chr2	30354538	C-T	Hetero	INTERGENIC
SBS	Chr2	31099134	A-G	Hetero	INTERGENIC
SBS	Chr3	10864835	T-C	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	30883731	C-T	Homo	INTERGENIC
SBS	Chr3	34211834	A-G	Homo	UTR_5_PRIME
SBS	Chr4	7902090	G-A	Hetero	INTERGENIC
SBS	Chr5	7889816	T-G	Hetero	INTERGENIC
SBS	Chr5	13865962	T-A	Homo	INTERGENIC
SBS	Chr5	16192533	C-T	Homo	UTR_3_PRIME
SBS	Chr5	17580329	G-A	Homo	INTERGENIC
SBS	Chr5	18937440	T-A	Hetero	INTERGENIC
SBS	Chr5	22410037	G-A	Hetero	INTERGENIC
SBS	Chr5	28315133	C-A	Homo	INTERGENIC
SBS	Chr6	6925693	G-T	Homo	UTR_3_PRIME
SBS	Chr6	13881739	T-A	Hetero	INTERGENIC
SBS	Chr6	18481731	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g169003
SBS	Chr6	18682900	T-C	Hetero	INTERGENIC
SBS	Chr7	1033298	A-T	Homo	INTRON
SBS	Chr8	2262090	G-A	Hetero	INTERGENIC
SBS	Chr8	5865810	G-T	Hetero	INTERGENIC
SBS	Chr8	11405589	C-G	Hetero	INTERGENIC
SBS	Chr8	11532957	A-T	Hetero	INTERGENIC
SBS	Chr9	3079665	C-G	Homo	UTR_3_PRIME
SBS	Chr10	13174625	T-A	Homo	INTERGENIC
SBS	Chr10	13174627	G-A	Homo	INTERGENIC
SBS	Chr10	13174629	C-A	Homo	INTERGENIC
SBS	Chr11	10173265	T-C	Hetero	INTERGENIC
SBS	Chr12	11963907	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	379738	379745	7
Deletion	Chr5	2978906	2978909	3	OsKitaake05g034600
Deletion	Chr1	3529668	3529681	13
Deletion	Chr12	3840934	3840935	1
Deletion	Chr2	4546438	4546440	2
Deletion	Chr1	6079399	6079400	1
Deletion	Chr11	7237156	7237168	12
Deletion	Chr7	12641553	12641554	1
Deletion	Chr1	18092124	18092126	2
Deletion	Chr7	22836677	22836686	9
Deletion	Chr1	23069332	23069343	11
Deletion	Chr11	23316260	23316261	1
Deletion	Chr6	24663085	24663086	1
Deletion	Chr11	27381104	27381106	2
Deletion	Chr7	27480580	27480706	126
Deletion	Chr5	28235541	28235546	5
Deletion	Chr3	30748554	30748555	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	17289949	17738465
Inversion	Chr2	17289954	17738462

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes