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Mutant Information

Mutant Name	FN-221 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-221 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23052954 G-A Homo INTERGENIC
SBS Chr2 14428345 T-C Hetero INTERGENIC
SBS Chr2 18831406 G-C Homo INTERGENIC
SBS Chr4 1978525 A-G Hetero INTRON
SBS Chr4 8276325 G-A Hetero INTERGENIC
SBS Chr4 12216802 G-A Hetero INTERGENIC
SBS Chr4 19675953 T-G Hetero INTRON
SBS Chr5 13109796 C-T Hetero INTERGENIC
SBS Chr5 25231253 G-T Hetero INTERGENIC
SBS Chr6 15378259 G-A Hetero INTERGENIC
SBS Chr7 791659 T-G Hetero INTERGENIC
SBS Chr8 1644334 G-A Hetero INTERGENIC
SBS Chr8 9201402 A-C Hetero INTERGENIC
SBS Chr9 14197047 C-T Hetero INTRON
SBS Chr9 21160096 C-G Hetero INTERGENIC
SBS Chr10 10674409 G-A Hetero INTRON
SBS Chr10 13309277 C-T Hetero INTERGENIC
SBS Chr10 19460759 C-A Hetero INTERGENIC
SBS Chr10 20034143 A-G Hetero INTERGENIC
SBS Chr10 20396749 T-C Hetero INTRON
SBS Chr11 4856063 T-G Homo INTERGENIC
SBS Chr11 5780702 A-G Homo INTERGENIC
SBS Chr11 8674608 A-C Hetero INTERGENIC
SBS Chr11 11957174 T-C Homo INTERGENIC
SBS Chr12 11932577 A-T Homo INTERGENIC
SBS Chr12 19240925 T-A Homo INTERGENIC
SBS Chr12 23361087 G-A Hetero INTRON
SBS Chr12 24857411 A-T Hetero INTRON

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3159625 3159627 2
Deletion Chr11 3770735 3770738 3
Deletion Chr4 4876522 4876526 4
Deletion Chr4 5201836 5201838 2
Deletion Chr9 5577703 5577709 6
Deletion Chr9 8625618 8625619 1
Deletion Chr6 9619128 9619129 1
Deletion Chr9 9739340 9739342 2
Deletion Chr5 10448925 10448937 12
Deletion Chr4 11005966 11005975 9
Deletion Chr11 11614323 11614324 1
Deletion Chr5 11762395 11762396 1
Deletion Chr10 11838169 11838170 1
Deletion Chr1 12684054 12684059 5
Deletion Chr5 13104833 13104834 1
Deletion Chr3 15133154 15133160 6
Deletion Chr10 15443011 15443013 2 OsKitaake10g099400
Deletion Chr6 15673381 15673389 8
Deletion Chr5 16371327 16371335 8
Deletion Chr3 16582595 16582596 1 OsKitaake03g209600
Deletion Chr10 16742811 16742819 8
Deletion Chr9 20959414 20959420 6 OsKitaake09g179400
Deletion Chr5 21057150 21057155 5
Deletion Chr4 21301562 21301566 4
Deletion Chr10 22464048 22464054 6
Deletion Chr12 23786679 23786681 2 OsKitaake12g191600
Deletion Chr4 24832600 24832601 1
Deletion Chr7 28729001 28737000 7999 2
Deletion Chr3 28797708 28797711 3
Deletion Chr5 29461455 29461457 2
Deletion Chr2 29632736 29632737 1
Deletion Chr3 32678894 32678914 20
Deletion Chr1 42443298 42443304 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 490927 490929 1
Insertion Chr1 29663137 29663139 1
Insertion Chr3 19007812 19007815 2
Insertion Chr7 337084 337086 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 9013650 9535111 OsKitaake09g057900
Inversion Chr9 9013657 9535119 OsKitaake09g057900
Inversion Chr3 35074175 35274862

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9622076 Chr4 35130961 OsKitaake04g295500
Translocation Chr4 35130966 Chr2 35838526 2
Translocation Chr4 35151567 Chr2 35838528 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23052954	G-A	Homo	INTERGENIC
SBS	Chr2	14428345	T-C	Hetero	INTERGENIC
SBS	Chr2	18831406	G-C	Homo	INTERGENIC
SBS	Chr4	1978525	A-G	Hetero	INTRON
SBS	Chr4	8276325	G-A	Hetero	INTERGENIC
SBS	Chr4	12216802	G-A	Hetero	INTERGENIC
SBS	Chr4	19675953	T-G	Hetero	INTRON
SBS	Chr5	13109796	C-T	Hetero	INTERGENIC
SBS	Chr5	25231253	G-T	Hetero	INTERGENIC
SBS	Chr6	15378259	G-A	Hetero	INTERGENIC
SBS	Chr7	791659	T-G	Hetero	INTERGENIC
SBS	Chr8	1644334	G-A	Hetero	INTERGENIC
SBS	Chr8	9201402	A-C	Hetero	INTERGENIC
SBS	Chr9	14197047	C-T	Hetero	INTRON
SBS	Chr9	21160096	C-G	Hetero	INTERGENIC
SBS	Chr10	10674409	G-A	Hetero	INTRON
SBS	Chr10	13309277	C-T	Hetero	INTERGENIC
SBS	Chr10	19460759	C-A	Hetero	INTERGENIC
SBS	Chr10	20034143	A-G	Hetero	INTERGENIC
SBS	Chr10	20396749	T-C	Hetero	INTRON
SBS	Chr11	4856063	T-G	Homo	INTERGENIC
SBS	Chr11	5780702	A-G	Homo	INTERGENIC
SBS	Chr11	8674608	A-C	Hetero	INTERGENIC
SBS	Chr11	11957174	T-C	Homo	INTERGENIC
SBS	Chr12	11932577	A-T	Homo	INTERGENIC
SBS	Chr12	19240925	T-A	Homo	INTERGENIC
SBS	Chr12	23361087	G-A	Hetero	INTRON
SBS	Chr12	24857411	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3159625	3159627	2
Deletion	Chr11	3770735	3770738	3
Deletion	Chr4	4876522	4876526	4
Deletion	Chr4	5201836	5201838	2
Deletion	Chr9	5577703	5577709	6
Deletion	Chr9	8625618	8625619	1
Deletion	Chr6	9619128	9619129	1
Deletion	Chr9	9739340	9739342	2
Deletion	Chr5	10448925	10448937	12
Deletion	Chr4	11005966	11005975	9
Deletion	Chr11	11614323	11614324	1
Deletion	Chr5	11762395	11762396	1
Deletion	Chr10	11838169	11838170	1
Deletion	Chr1	12684054	12684059	5
Deletion	Chr5	13104833	13104834	1
Deletion	Chr3	15133154	15133160	6
Deletion	Chr10	15443011	15443013	2	OsKitaake10g099400
Deletion	Chr6	15673381	15673389	8
Deletion	Chr5	16371327	16371335	8
Deletion	Chr3	16582595	16582596	1	OsKitaake03g209600
Deletion	Chr10	16742811	16742819	8
Deletion	Chr9	20959414	20959420	6	OsKitaake09g179400
Deletion	Chr5	21057150	21057155	5
Deletion	Chr4	21301562	21301566	4
Deletion	Chr10	22464048	22464054	6
Deletion	Chr12	23786679	23786681	2	OsKitaake12g191600
Deletion	Chr4	24832600	24832601	1
Deletion	Chr7	28729001	28737000	7999	2
Deletion	Chr3	28797708	28797711	3
Deletion	Chr5	29461455	29461457	2
Deletion	Chr2	29632736	29632737	1
Deletion	Chr3	32678894	32678914	20
Deletion	Chr1	42443298	42443304	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9013650	9535111	OsKitaake09g057900
Inversion	Chr9	9013657	9535119	OsKitaake09g057900
Inversion	Chr3	35074175	35274862

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes