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Mutant Information

Mutant Name	FN-222 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-222 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13433309 C-T Hetero INTERGENIC
SBS Chr1 15237482 G-A Homo INTRON
SBS Chr1 16558146 A-G Homo INTERGENIC
SBS Chr1 16869753 C-T Hetero INTERGENIC
SBS Chr1 26778419 A-T Homo INTERGENIC
SBS Chr1 29313084 T-C Homo INTERGENIC
SBS Chr1 29414299 G-T Homo INTERGENIC
SBS Chr1 29414300 C-T Homo INTERGENIC
SBS Chr1 36943935 T-C Hetero INTERGENIC
SBS Chr3 9547591 G-A Hetero INTERGENIC
SBS Chr3 26527977 C-T Hetero INTERGENIC
SBS Chr3 28716522 T-A Homo INTERGENIC
SBS Chr3 28716617 C-T Homo INTERGENIC
SBS Chr3 31197904 A-T Hetero INTERGENIC
SBS Chr3 34245068 G-A Homo INTERGENIC
SBS Chr4 749347 T-A Hetero INTERGENIC
SBS Chr4 7426087 C-T Hetero INTRON
SBS Chr4 11365834 G-A Hetero INTERGENIC
SBS Chr4 13703320 C-T Hetero INTERGENIC
SBS Chr4 13898553 A-C Hetero INTERGENIC
SBS Chr4 18778068 G-T Hetero UTR_3_PRIME
SBS Chr4 19870824 G-A Hetero INTERGENIC
SBS Chr6 1807109 G-A Hetero INTERGENIC
SBS Chr6 6582579 A-T Hetero INTRON
SBS Chr6 18035568 G-A Hetero INTERGENIC
SBS Chr6 21183012 T-A Hetero INTERGENIC
SBS Chr6 22919373 G-A Hetero INTERGENIC
SBS Chr7 3885634 G-T Hetero INTERGENIC
SBS Chr7 12794161 T-A Hetero INTRON
SBS Chr8 6926966 G-A Hetero INTERGENIC
SBS Chr8 10463228 G-A Hetero INTERGENIC
SBS Chr8 14117725 G-A Hetero INTERGENIC
SBS Chr8 14117726 C-A Hetero INTERGENIC
SBS Chr8 18828240 C-T Homo UTR_3_PRIME
SBS Chr9 825891 G-A Homo INTERGENIC
SBS Chr10 1214433 G-A Hetero INTERGENIC
SBS Chr10 1260325 T-C Hetero INTERGENIC
SBS Chr10 22634162 T-C Hetero INTERGENIC
SBS Chr11 3128327 T-A Hetero INTERGENIC
SBS Chr11 9994559 G-A Hetero INTERGENIC
SBS Chr11 13067703 A-T Hetero INTERGENIC
SBS Chr12 3462798 C-T Hetero INTERGENIC
SBS Chr12 3781028 A-T Hetero INTERGENIC
SBS Chr12 5560264 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 12887758 A-C Hetero INTERGENIC
SBS Chr12 26806108 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1216607 1216608 1
Deletion Chr11 3572703 3572708 5
Deletion Chr5 5223777 5223780 3
Deletion Chr8 6269242 6269423 181
Deletion Chr5 7371048 7371050 2
Deletion Chr5 7711482 7711484 2
Deletion Chr9 10360108 10360121 13 OsKitaake09g064200
Deletion Chr1 10939778 10939784 6
Deletion Chr10 11331254 11331256 2
Deletion Chr12 12272484 12272485 1
Deletion Chr9 15604865 15604868 3
Deletion Chr10 16240633 16240634 1
Deletion Chr10 17808405 17808414 9 OsKitaake10g123300
Deletion Chr8 20109562 20109564 2
Deletion Chr6 24406737 24406739 2 OsKitaake06g215600
Deletion Chr4 24769459 24769462 3
Deletion Chr6 25127353 25127367 14
Deletion Chr4 29067426 29067427 1
Deletion Chr1 29324170 29324179 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr10 18589669 18589671 1
Insertion Chr5 30188951 30188954 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13433309	C-T	Hetero	INTERGENIC
SBS	Chr1	15237482	G-A	Homo	INTRON
SBS	Chr1	16558146	A-G	Homo	INTERGENIC
SBS	Chr1	16869753	C-T	Hetero	INTERGENIC
SBS	Chr1	26778419	A-T	Homo	INTERGENIC
SBS	Chr1	29313084	T-C	Homo	INTERGENIC
SBS	Chr1	29414299	G-T	Homo	INTERGENIC
SBS	Chr1	29414300	C-T	Homo	INTERGENIC
SBS	Chr1	36943935	T-C	Hetero	INTERGENIC
SBS	Chr3	9547591	G-A	Hetero	INTERGENIC
SBS	Chr3	26527977	C-T	Hetero	INTERGENIC
SBS	Chr3	28716522	T-A	Homo	INTERGENIC
SBS	Chr3	28716617	C-T	Homo	INTERGENIC
SBS	Chr3	31197904	A-T	Hetero	INTERGENIC
SBS	Chr3	34245068	G-A	Homo	INTERGENIC
SBS	Chr4	749347	T-A	Hetero	INTERGENIC
SBS	Chr4	7426087	C-T	Hetero	INTRON
SBS	Chr4	11365834	G-A	Hetero	INTERGENIC
SBS	Chr4	13703320	C-T	Hetero	INTERGENIC
SBS	Chr4	13898553	A-C	Hetero	INTERGENIC
SBS	Chr4	18778068	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	19870824	G-A	Hetero	INTERGENIC
SBS	Chr6	1807109	G-A	Hetero	INTERGENIC
SBS	Chr6	6582579	A-T	Hetero	INTRON
SBS	Chr6	18035568	G-A	Hetero	INTERGENIC
SBS	Chr6	21183012	T-A	Hetero	INTERGENIC
SBS	Chr6	22919373	G-A	Hetero	INTERGENIC
SBS	Chr7	3885634	G-T	Hetero	INTERGENIC
SBS	Chr7	12794161	T-A	Hetero	INTRON
SBS	Chr8	6926966	G-A	Hetero	INTERGENIC
SBS	Chr8	10463228	G-A	Hetero	INTERGENIC
SBS	Chr8	14117725	G-A	Hetero	INTERGENIC
SBS	Chr8	14117726	C-A	Hetero	INTERGENIC
SBS	Chr8	18828240	C-T	Homo	UTR_3_PRIME
SBS	Chr9	825891	G-A	Homo	INTERGENIC
SBS	Chr10	1214433	G-A	Hetero	INTERGENIC
SBS	Chr10	1260325	T-C	Hetero	INTERGENIC
SBS	Chr10	22634162	T-C	Hetero	INTERGENIC
SBS	Chr11	3128327	T-A	Hetero	INTERGENIC
SBS	Chr11	9994559	G-A	Hetero	INTERGENIC
SBS	Chr11	13067703	A-T	Hetero	INTERGENIC
SBS	Chr12	3462798	C-T	Hetero	INTERGENIC
SBS	Chr12	3781028	A-T	Hetero	INTERGENIC
SBS	Chr12	5560264	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12887758	A-C	Hetero	INTERGENIC
SBS	Chr12	26806108	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1216607	1216608	1
Deletion	Chr11	3572703	3572708	5
Deletion	Chr5	5223777	5223780	3
Deletion	Chr8	6269242	6269423	181
Deletion	Chr5	7371048	7371050	2
Deletion	Chr5	7711482	7711484	2
Deletion	Chr9	10360108	10360121	13	OsKitaake09g064200
Deletion	Chr1	10939778	10939784	6
Deletion	Chr10	11331254	11331256	2
Deletion	Chr12	12272484	12272485	1
Deletion	Chr9	15604865	15604868	3
Deletion	Chr10	16240633	16240634	1
Deletion	Chr10	17808405	17808414	9	OsKitaake10g123300
Deletion	Chr8	20109562	20109564	2
Deletion	Chr6	24406737	24406739	2	OsKitaake06g215600
Deletion	Chr4	24769459	24769462	3
Deletion	Chr6	25127353	25127367	14
Deletion	Chr4	29067426	29067427	1
Deletion	Chr1	29324170	29324179	9

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes