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Mutant Information

Mutant Name	FN-223 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-223 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4890716 T-C Homo INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 8322776 C-T Hetero INTERGENIC
SBS Chr2 9308698 G-A Hetero INTERGENIC
SBS Chr2 11723681 A-C Hetero INTERGENIC
SBS Chr2 25328895 A-T Hetero INTERGENIC
SBS Chr2 26432874 C-T Hetero INTERGENIC
SBS Chr2 26592618 A-T Hetero INTERGENIC
SBS Chr3 7503187 A-C Hetero INTRON
SBS Chr3 12540330 A-T Hetero INTERGENIC
SBS Chr3 15255813 C-T Homo INTERGENIC
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 31545950 C-G Homo INTERGENIC
SBS Chr3 31961912 C-T Hetero INTRON
SBS Chr4 9665756 G-A Homo INTERGENIC
SBS Chr4 30329730 C-T Hetero INTERGENIC
SBS Chr5 5492331 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g059501
SBS Chr5 19271220 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g151100
SBS Chr5 22073569 C-T Hetero INTERGENIC
SBS Chr6 1029388 T-C Hetero INTERGENIC
SBS Chr6 4889017 G-A Hetero INTERGENIC
SBS Chr6 10601941 C-T Hetero UTR_5_PRIME
SBS Chr6 18154695 G-C Hetero INTERGENIC
SBS Chr6 30816507 G-A Hetero INTERGENIC
SBS Chr7 188082 C-T Hetero INTERGENIC
SBS Chr7 17451786 C-A Homo INTERGENIC
SBS Chr8 8524931 C-A Homo INTERGENIC
SBS Chr8 22142001 A-C Hetero INTRON
SBS Chr8 22879050 T-C Homo INTERGENIC
SBS Chr9 8324939 G-A Hetero INTERGENIC
SBS Chr9 18512696 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g145300
SBS Chr9 18512697 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g145300
SBS Chr9 19422688 A-G Hetero INTERGENIC
SBS Chr9 19619549 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g160500
SBS Chr9 19619550 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 19619556 A-T Hetero STOP_GAINED OsKitaake09g160500
SBS Chr9 21433059 G-C Hetero INTERGENIC
SBS Chr10 3387144 T-C Homo INTERGENIC
SBS Chr10 12149382 C-G Homo INTERGENIC
SBS Chr10 22286570 C-T Homo UTR_3_PRIME
SBS Chr11 4507822 T-C Hetero INTERGENIC
SBS Chr11 12794264 G-A Hetero INTERGENIC
SBS Chr11 28870757 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g236400

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2271848 2271850 2
Deletion Chr8 2902935 2902939 4
Deletion Chr4 3118315 3118316 1
Deletion Chr12 4631092 4631093 1
Deletion Chr11 6697273 6697571 298
Deletion Chr2 11238536 11238537 1
Deletion Chr9 13487132 13487133 1
Deletion Chr9 13489187 13489188 1
Deletion Chr6 14091510 14091511 1
Deletion Chr6 17310850 17310854 4
Deletion Chr6 18161432 18161450 18
Deletion Chr9 18233026 18233029 3 OsKitaake09g141200
Deletion Chr9 18327470 18327474 4
Deletion Chr6 19584489 19584491 2
Deletion Chr9 20668682 20668685 3
Deletion Chr12 25850667 25850669 2
Deletion Chr1 32651674 32651675 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 13792852 13792854 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6027043 6063050
Inversion Chr5 6027063 6063068
Inversion Chr11 21761651 21797287

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 980900 Chr2 2105978
Translocation Chr6 981898 Chr2 2105979

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4890716	T-C	Homo	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	8322776	C-T	Hetero	INTERGENIC
SBS	Chr2	9308698	G-A	Hetero	INTERGENIC
SBS	Chr2	11723681	A-C	Hetero	INTERGENIC
SBS	Chr2	25328895	A-T	Hetero	INTERGENIC
SBS	Chr2	26432874	C-T	Hetero	INTERGENIC
SBS	Chr2	26592618	A-T	Hetero	INTERGENIC
SBS	Chr3	7503187	A-C	Hetero	INTRON
SBS	Chr3	12540330	A-T	Hetero	INTERGENIC
SBS	Chr3	15255813	C-T	Homo	INTERGENIC
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	31545950	C-G	Homo	INTERGENIC
SBS	Chr3	31961912	C-T	Hetero	INTRON
SBS	Chr4	9665756	G-A	Homo	INTERGENIC
SBS	Chr4	30329730	C-T	Hetero	INTERGENIC
SBS	Chr5	5492331	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g059501
SBS	Chr5	19271220	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g151100
SBS	Chr5	22073569	C-T	Hetero	INTERGENIC
SBS	Chr6	1029388	T-C	Hetero	INTERGENIC
SBS	Chr6	4889017	G-A	Hetero	INTERGENIC
SBS	Chr6	10601941	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	18154695	G-C	Hetero	INTERGENIC
SBS	Chr6	30816507	G-A	Hetero	INTERGENIC
SBS	Chr7	188082	C-T	Hetero	INTERGENIC
SBS	Chr7	17451786	C-A	Homo	INTERGENIC
SBS	Chr8	8524931	C-A	Homo	INTERGENIC
SBS	Chr8	22142001	A-C	Hetero	INTRON
SBS	Chr8	22879050	T-C	Homo	INTERGENIC
SBS	Chr9	8324939	G-A	Hetero	INTERGENIC
SBS	Chr9	18512696	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g145300
SBS	Chr9	18512697	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g145300
SBS	Chr9	19422688	A-G	Hetero	INTERGENIC
SBS	Chr9	19619549	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g160500
SBS	Chr9	19619550	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	19619556	A-T	Hetero	STOP_GAINED	OsKitaake09g160500
SBS	Chr9	21433059	G-C	Hetero	INTERGENIC
SBS	Chr10	3387144	T-C	Homo	INTERGENIC
SBS	Chr10	12149382	C-G	Homo	INTERGENIC
SBS	Chr10	22286570	C-T	Homo	UTR_3_PRIME
SBS	Chr11	4507822	T-C	Hetero	INTERGENIC
SBS	Chr11	12794264	G-A	Hetero	INTERGENIC
SBS	Chr11	28870757	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g236400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2271848	2271850	2
Deletion	Chr8	2902935	2902939	4
Deletion	Chr4	3118315	3118316	1
Deletion	Chr12	4631092	4631093	1
Deletion	Chr11	6697273	6697571	298
Deletion	Chr2	11238536	11238537	1
Deletion	Chr9	13487132	13487133	1
Deletion	Chr9	13489187	13489188	1
Deletion	Chr6	14091510	14091511	1
Deletion	Chr6	17310850	17310854	4
Deletion	Chr6	18161432	18161450	18
Deletion	Chr9	18233026	18233029	3	OsKitaake09g141200
Deletion	Chr9	18327470	18327474	4
Deletion	Chr6	19584489	19584491	2
Deletion	Chr9	20668682	20668685	3
Deletion	Chr12	25850667	25850669	2
Deletion	Chr1	32651674	32651675	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6027043	6063050
Inversion	Chr5	6027063	6063068
Inversion	Chr11	21761651	21797287

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes