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| Mutant Information |
|---|
| Mutant Name | FN-225 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-225 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 639470 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20007639 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25825569 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 39028567 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18786194 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 12446822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15538582 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g200100 |
| SBS | Chr3 | 29821299 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6102001 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 12827974 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27233311 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14676197 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27699560 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4696676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8691737 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 19344905 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 24065366 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g212800 |
| SBS | Chr7 | 26925950 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26925957 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26925965 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 4711945 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5455363 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7380763 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 25061130 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 1130554 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 14998400 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14998401 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 16178045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25429875 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10464656 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10464657 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14092579 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16122940 | C-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1882728 | 1882738 | 10 | |
| Deletion | Chr4 | 2142371 | 2142372 | 1 | |
| Deletion | Chr7 | 4482216 | 4482217 | 1 | |
| Deletion | Chr6 | 6809681 | 6809694 | 13 | |
| Deletion | Chr1 | 10303580 | 10303585 | 5 | |
| Deletion | Chr4 | 15864378 | 15864380 | 2 | OsKitaake04g077550 |
| Deletion | Chr12 | 15987749 | 15987750 | 1 | |
| Deletion | Chr3 | 17417830 | 17417840 | 10 | |
| Deletion | Chr3 | 21688813 | 21688823 | 10 | |
| Deletion | Chr3 | 22039660 | 22039661 | 1 | |
| Deletion | Chr4 | 22136630 | 22136633 | 3 | |
| Deletion | Chr10 | 23562807 | 23562808 | 1 | |
| Deletion | Chr1 | 27132426 | 27132445 | 19 | |
| Deletion | Chr2 | 29831470 | 29831472 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 33117652 | 33117654 | 1 | OsKitaake04g269100  |
| Insertion | Chr1 | 15804621 | 15804623 | 1 | OsKitaake01g172500 |
| Insertion | Chr6 | 2211286 | 2211291 | 4 |