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Mutant Information

Mutant Name	FN-226 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-226 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 429208 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g006000
SBS Chr1 13077109 T-C Homo INTRON
SBS Chr1 17987890 C-T Homo INTRON
SBS Chr1 34762326 T-A Hetero INTERGENIC
SBS Chr2 8996624 A-G Homo INTRON
SBS Chr2 13658276 T-C Hetero INTERGENIC
SBS Chr2 21978994 T-G Homo INTERGENIC
SBS Chr2 25423267 T-C Homo INTRON
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr4 7330679 G-A Hetero INTERGENIC
SBS Chr4 22555364 G-A Hetero INTERGENIC
SBS Chr4 22555365 C-G Hetero INTERGENIC
SBS Chr5 7668059 C-T Homo INTERGENIC
SBS Chr5 21910923 A-G Hetero INTERGENIC
SBS Chr5 24938358 G-A Hetero INTERGENIC
SBS Chr6 15722039 A-C Hetero INTERGENIC
SBS Chr6 20400760 G-A Hetero INTERGENIC
SBS Chr6 26605268 G-A Homo UTR_3_PRIME
SBS Chr6 29108286 T-A Hetero INTRON
SBS Chr7 10335583 T-A Hetero INTERGENIC
SBS Chr7 19839665 A-G Hetero INTERGENIC
SBS Chr8 15608879 T-C Hetero INTERGENIC
SBS Chr8 20973099 A-G Hetero INTRON
SBS Chr8 29093498 G-A Homo INTERGENIC
SBS Chr10 3316470 C-T Homo INTERGENIC
SBS Chr10 4550131 G-T Hetero INTERGENIC
SBS Chr10 14365491 C-T Hetero INTERGENIC
SBS Chr10 22500961 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 3427189 C-G Hetero INTERGENIC
SBS Chr11 7907302 C-T Hetero UTR_3_PRIME
SBS Chr11 10585370 T-A Hetero INTRON
SBS Chr11 18340415 C-A Homo INTERGENIC
SBS Chr12 2841661 G-T Hetero INTERGENIC
SBS Chr12 8380400 T-G Hetero INTERGENIC
SBS Chr12 11474603 G-A Hetero INTERGENIC
SBS Chr12 13150711 T-A Hetero INTERGENIC
SBS Chr12 18855122 C-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 60051 60060 9
Deletion Chr3 528509 528521 12
Deletion Chr11 1002001 1396000 393999 63
Deletion Chr7 6016364 6016367 3
Deletion Chr11 6157531 6157538 7
Deletion Chr11 6940596 6940607 11
Deletion Chr12 10371139 10371147 8
Deletion Chr6 13591031 13591038 7
Deletion Chr12 14117959 14117971 12
Deletion Chr10 17370585 17370586 1
Deletion Chr10 18772338 18772339 1
Deletion Chr3 20498318 20498321 3
Deletion Chr4 26522935 26522937 2
Deletion Chr1 33045679 33045681 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28666152 28666155 2
Insertion Chr2 8493493 8493497 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3426739 Chr6 12611819 OsKitaake06g134800
Translocation Chr11 3455111 Chr6 12611818 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	429208	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g006000
SBS	Chr1	13077109	T-C	Homo	INTRON
SBS	Chr1	17987890	C-T	Homo	INTRON
SBS	Chr1	34762326	T-A	Hetero	INTERGENIC
SBS	Chr2	8996624	A-G	Homo	INTRON
SBS	Chr2	13658276	T-C	Hetero	INTERGENIC
SBS	Chr2	21978994	T-G	Homo	INTERGENIC
SBS	Chr2	25423267	T-C	Homo	INTRON
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr4	7330679	G-A	Hetero	INTERGENIC
SBS	Chr4	22555364	G-A	Hetero	INTERGENIC
SBS	Chr4	22555365	C-G	Hetero	INTERGENIC
SBS	Chr5	7668059	C-T	Homo	INTERGENIC
SBS	Chr5	21910923	A-G	Hetero	INTERGENIC
SBS	Chr5	24938358	G-A	Hetero	INTERGENIC
SBS	Chr6	15722039	A-C	Hetero	INTERGENIC
SBS	Chr6	20400760	G-A	Hetero	INTERGENIC
SBS	Chr6	26605268	G-A	Homo	UTR_3_PRIME
SBS	Chr6	29108286	T-A	Hetero	INTRON
SBS	Chr7	10335583	T-A	Hetero	INTERGENIC
SBS	Chr7	19839665	A-G	Hetero	INTERGENIC
SBS	Chr8	15608879	T-C	Hetero	INTERGENIC
SBS	Chr8	20973099	A-G	Hetero	INTRON
SBS	Chr8	29093498	G-A	Homo	INTERGENIC
SBS	Chr10	3316470	C-T	Homo	INTERGENIC
SBS	Chr10	4550131	G-T	Hetero	INTERGENIC
SBS	Chr10	14365491	C-T	Hetero	INTERGENIC
SBS	Chr10	22500961	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	3427189	C-G	Hetero	INTERGENIC
SBS	Chr11	7907302	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	10585370	T-A	Hetero	INTRON
SBS	Chr11	18340415	C-A	Homo	INTERGENIC
SBS	Chr12	2841661	G-T	Hetero	INTERGENIC
SBS	Chr12	8380400	T-G	Hetero	INTERGENIC
SBS	Chr12	11474603	G-A	Hetero	INTERGENIC
SBS	Chr12	13150711	T-A	Hetero	INTERGENIC
SBS	Chr12	18855122	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	60051	60060	9
Deletion	Chr3	528509	528521	12
Deletion	Chr11	1002001	1396000	393999	63
Deletion	Chr7	6016364	6016367	3
Deletion	Chr11	6157531	6157538	7
Deletion	Chr11	6940596	6940607	11
Deletion	Chr12	10371139	10371147	8
Deletion	Chr6	13591031	13591038	7
Deletion	Chr12	14117959	14117971	12
Deletion	Chr10	17370585	17370586	1
Deletion	Chr10	18772338	18772339	1
Deletion	Chr3	20498318	20498321	3
Deletion	Chr4	26522935	26522937	2
Deletion	Chr1	33045679	33045681	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3426739	Chr6	12611819	OsKitaake06g134800
Translocation	Chr11	3455111	Chr6	12611818	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes