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| Mutant Information |
|---|
| Mutant Name | FN-227 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-227 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9761787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33544167 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42194237 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14530624 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 20606349 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23345349 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 35045909 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4467547 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 26455007 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 24908069 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15965498 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26954672 | A-G | Homo | INTRON | |
| SBS | Chr7 | 9084649 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16442584 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1682361 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5435844 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5677739 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 12020652 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14423013 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 15518885 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 15872738 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23282204 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10725808 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 15699299 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 29250849 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9571456 | A-G | Homo | INTRON |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 937503 | 937516 | 13 | |
| Deletion | Chr8 | 5432526 | 5432528 | 2 | |
| Deletion | Chr5 | 9361438 | 9361441 | 3 | |
| Deletion | Chr11 | 10248867 | 10249080 | 213 | |
| Deletion | Chr10 | 10839254 | 10839256 | 2 | |
| Deletion | Chr2 | 11077389 | 11077394 | 5 | OsKitaake02g129400 |
| Deletion | Chr5 | 12028676 | 12028678 | 2 | |
| Deletion | Chr11 | 18052001 | 18203000 | 150999 | 5 |
| Deletion | Chr6 | 18099425 | 18099551 | 126 | |
| Deletion | Chr11 | 20607688 | 20607690 | 2 | OsKitaake11g161200 |
| Deletion | Chr7 | 22588674 | 22589027 | 353 | |
| Deletion | Chr11 | 22835284 | 22835290 | 6 | |
| Deletion | Chr7 | 27960622 | 27960623 | 1 | |
| Deletion | Chr2 | 31217998 | 31218013 | 15 | |
| Deletion | Chr2 | 31446362 | 31446367 | 5 | |
| Deletion | Chr2 | 32456316 | 32456329 | 13 | |
| Deletion | Chr3 | 35968488 | 35968489 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 10666261 | 10666264 | 2 | |
| Insertion | Chr12 | 7334223 | 7334226 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 6767436 | 6896990 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 18051381 | Chr1 | 33190687 | |
| Translocation | Chr11 | 18052436 | Chr1 | 33190647 |