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Mutant Information

Mutant Name	FN-228 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-228 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3360054 G-A Homo INTERGENIC
SBS Chr1 3360055 C-A Homo INTERGENIC
SBS Chr1 4871088 A-G Hetero INTERGENIC
SBS Chr1 10734944 A-G Hetero INTRON
SBS Chr1 18150871 A-T Hetero INTERGENIC
SBS Chr1 20937841 G-T Hetero INTERGENIC
SBS Chr1 33581868 A-G Homo INTRON
SBS Chr2 9036009 C-T Homo INTERGENIC
SBS Chr2 15615431 G-T Homo INTERGENIC
SBS Chr2 17004831 C-T Homo INTERGENIC
SBS Chr2 21927490 C-G Hetero INTERGENIC
SBS Chr2 35836378 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 24777524 G-A Hetero INTERGENIC
SBS Chr4 1995533 C-A Hetero INTERGENIC
SBS Chr4 24508794 A-T Hetero INTERGENIC
SBS Chr4 30672210 A-C Homo INTERGENIC
SBS Chr5 8489164 G-A Homo INTERGENIC
SBS Chr5 16183307 C-T Homo INTERGENIC
SBS Chr5 20265952 G-A Hetero INTERGENIC
SBS Chr6 3803194 A-G Hetero INTERGENIC
SBS Chr6 9016539 A-G Hetero INTERGENIC
SBS Chr7 8067071 C-A Hetero INTERGENIC
SBS Chr7 22027405 C-T Hetero INTERGENIC
SBS Chr7 24010234 G-A Homo INTERGENIC
SBS Chr7 28067617 T-A Homo INTERGENIC
SBS Chr8 13196921 A-G Hetero INTERGENIC
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr9 16398018 A-G Hetero INTERGENIC
SBS Chr10 69362 T-C Hetero INTERGENIC
SBS Chr10 3228860 C-T Hetero INTERGENIC
SBS Chr10 13908124 T-A Hetero INTERGENIC
SBS Chr10 15894658 A-G Hetero INTRON
SBS Chr10 16819136 A-T Homo INTERGENIC
SBS Chr11 12318880 T-A Hetero INTERGENIC
SBS Chr11 19374626 T-C Hetero INTERGENIC
SBS Chr12 25837540 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr8 513028 513030 2
Deletion Chr5 1697620 1697622 2
Deletion Chr7 11004306 11004313 7
Deletion Chr5 16089635 16089639 4
Deletion Chr8 16986927 16986932 5
Deletion Chr11 20127830 20127832 2
Deletion Chr12 22995057 22995059 2
Deletion Chr1 26858684 26858685 1
Deletion Chr7 27480580 27480706 126
Deletion Chr2 27791231 27791232 1 OsKitaake02g279400
Deletion Chr1 38372016 38372019 3 OsKitaake01g409700

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 9890301 9890364 62
Insertion Chr6 14036316 14036320 3
Insertion Chr12 20756315 20756317 1 OsKitaake12g162200

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3597617 4503053
Inversion Chr8 3597622 3598266
Inversion Chr1 16221266 16240643
Inversion Chr1 16221271 16240653
Inversion Chr12 18060514 18077952
Inversion Chr12 18060535 18077968

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3360054	G-A	Homo	INTERGENIC
SBS	Chr1	3360055	C-A	Homo	INTERGENIC
SBS	Chr1	4871088	A-G	Hetero	INTERGENIC
SBS	Chr1	10734944	A-G	Hetero	INTRON
SBS	Chr1	18150871	A-T	Hetero	INTERGENIC
SBS	Chr1	20937841	G-T	Hetero	INTERGENIC
SBS	Chr1	33581868	A-G	Homo	INTRON
SBS	Chr2	9036009	C-T	Homo	INTERGENIC
SBS	Chr2	15615431	G-T	Homo	INTERGENIC
SBS	Chr2	17004831	C-T	Homo	INTERGENIC
SBS	Chr2	21927490	C-G	Hetero	INTERGENIC
SBS	Chr2	35836378	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24777524	G-A	Hetero	INTERGENIC
SBS	Chr4	1995533	C-A	Hetero	INTERGENIC
SBS	Chr4	24508794	A-T	Hetero	INTERGENIC
SBS	Chr4	30672210	A-C	Homo	INTERGENIC
SBS	Chr5	8489164	G-A	Homo	INTERGENIC
SBS	Chr5	16183307	C-T	Homo	INTERGENIC
SBS	Chr5	20265952	G-A	Hetero	INTERGENIC
SBS	Chr6	3803194	A-G	Hetero	INTERGENIC
SBS	Chr6	9016539	A-G	Hetero	INTERGENIC
SBS	Chr7	8067071	C-A	Hetero	INTERGENIC
SBS	Chr7	22027405	C-T	Hetero	INTERGENIC
SBS	Chr7	24010234	G-A	Homo	INTERGENIC
SBS	Chr7	28067617	T-A	Homo	INTERGENIC
SBS	Chr8	13196921	A-G	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr9	16398018	A-G	Hetero	INTERGENIC
SBS	Chr10	69362	T-C	Hetero	INTERGENIC
SBS	Chr10	3228860	C-T	Hetero	INTERGENIC
SBS	Chr10	13908124	T-A	Hetero	INTERGENIC
SBS	Chr10	15894658	A-G	Hetero	INTRON
SBS	Chr10	16819136	A-T	Homo	INTERGENIC
SBS	Chr11	12318880	T-A	Hetero	INTERGENIC
SBS	Chr11	19374626	T-C	Hetero	INTERGENIC
SBS	Chr12	25837540	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr8	513028	513030	2
Deletion	Chr5	1697620	1697622	2
Deletion	Chr7	11004306	11004313	7
Deletion	Chr5	16089635	16089639	4
Deletion	Chr8	16986927	16986932	5
Deletion	Chr11	20127830	20127832	2
Deletion	Chr12	22995057	22995059	2
Deletion	Chr1	26858684	26858685	1
Deletion	Chr7	27480580	27480706	126
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400
Deletion	Chr1	38372016	38372019	3	OsKitaake01g409700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3597617	4503053
Inversion	Chr8	3597622	3598266
Inversion	Chr1	16221266	16240643
Inversion	Chr1	16221271	16240653
Inversion	Chr12	18060514	18077952
Inversion	Chr12	18060535	18077968

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes