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Mutant Information

Mutant Name	FN-23 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-23 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1914866 G-A Hetero INTERGENIC
SBS Chr1 6202389 C-A Hetero INTERGENIC
SBS Chr1 8506038 A-G Homo INTERGENIC
SBS Chr1 13020098 G-T Hetero INTERGENIC
SBS Chr1 22630950 G-A Hetero INTRON
SBS Chr1 31865005 C-A Homo INTERGENIC
SBS Chr1 39704934 G-C Hetero INTERGENIC
SBS Chr1 43109415 G-A Hetero UTR_3_PRIME
SBS Chr2 1339938 G-T Hetero INTRON
SBS Chr2 6891925 G-A Homo INTRON
SBS Chr2 24180521 C-T Hetero INTERGENIC
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr2 34912391 G-A Hetero INTERGENIC
SBS Chr3 11538786 A-G Hetero INTERGENIC
SBS Chr3 20582484 T-C Homo INTERGENIC
SBS Chr3 20582485 C-A Homo INTERGENIC
SBS Chr3 31903701 G-C Hetero INTERGENIC
SBS Chr3 33239594 C-T Homo INTERGENIC
SBS Chr4 10685808 A-T Hetero INTERGENIC
SBS Chr5 2815171 A-T Homo SYNONYMOUS_CODING
SBS Chr5 2815172 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g032400
SBS Chr5 14927699 G-T Hetero INTERGENIC
SBS Chr5 16643746 A-T Homo INTERGENIC
SBS Chr5 17201199 G-C Homo INTERGENIC
SBS Chr5 17479242 A-T Homo INTERGENIC
SBS Chr6 4360581 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g059900
SBS Chr6 10630131 C-A Hetero INTRON
SBS Chr6 10632896 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g119501
SBS Chr7 9111768 A-T Homo INTERGENIC
SBS Chr7 18840903 A-T Homo INTRON
SBS Chr7 25953264 C-T Homo INTERGENIC
SBS Chr8 9822151 C-T Hetero INTRON
SBS Chr9 8125817 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 8211980 C-G Hetero INTERGENIC
SBS Chr9 22515847 C-A Hetero INTERGENIC
SBS Chr10 6365474 G-C Homo NON_SYNONYMOUS_CODING OsKitaake10g043200
SBS Chr10 12638644 A-G Hetero INTERGENIC
SBS Chr10 16643323 C-T Homo INTRON
SBS Chr10 22230974 G-A Hetero INTRON
SBS Chr11 17802763 A-G Hetero INTERGENIC
SBS Chr11 21040914 T-A Hetero INTERGENIC
SBS Chr12 7965132 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1362001 1432000 69999 14
Deletion Chr9 5221932 5221941 9
Deletion Chr2 6638595 6638597 2
Deletion Chr6 7758888 7758895 7
Deletion Chr1 11883150 11883151 1
Deletion Chr3 14160177 14160178 1
Deletion Chr3 15270636 15270637 1
Deletion Chr3 15875796 15875800 4
Deletion Chr8 16678551 16678556 5
Deletion Chr9 18446498 18446500 2
Deletion Chr5 21715980 21716005 25
Deletion Chr5 22153502 22153509 7
Deletion Chr3 25806604 25806608 4

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 8294512 8294515 2
Insertion Chr4 10082954 10082956 1 OsKitaake04g054100
Insertion Chr7 4388652 4388655 2
Insertion Chr10 12017572 12017574 1
Insertion Chr12 4052293 4052296 2
Insertion Chr2 9425865 9425867 1
Insertion Chr8 6843614 6843617 2
Insertion Chr12 2588479 2588481 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6570422 6766588
Inversion Chr1 30717538 30794898 OsKitaake01g304900
Inversion Chr1 30717539 30794903 OsKitaake01g304900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1362855 Chr9 6570417
Translocation Chr11 1363227 Chr9 7093404 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1914866	G-A	Hetero	INTERGENIC
SBS	Chr1	6202389	C-A	Hetero	INTERGENIC
SBS	Chr1	8506038	A-G	Homo	INTERGENIC
SBS	Chr1	13020098	G-T	Hetero	INTERGENIC
SBS	Chr1	22630950	G-A	Hetero	INTRON
SBS	Chr1	31865005	C-A	Homo	INTERGENIC
SBS	Chr1	39704934	G-C	Hetero	INTERGENIC
SBS	Chr1	43109415	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	1339938	G-T	Hetero	INTRON
SBS	Chr2	6891925	G-A	Homo	INTRON
SBS	Chr2	24180521	C-T	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr2	34912391	G-A	Hetero	INTERGENIC
SBS	Chr3	11538786	A-G	Hetero	INTERGENIC
SBS	Chr3	20582484	T-C	Homo	INTERGENIC
SBS	Chr3	20582485	C-A	Homo	INTERGENIC
SBS	Chr3	31903701	G-C	Hetero	INTERGENIC
SBS	Chr3	33239594	C-T	Homo	INTERGENIC
SBS	Chr4	10685808	A-T	Hetero	INTERGENIC
SBS	Chr5	2815171	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	2815172	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g032400
SBS	Chr5	14927699	G-T	Hetero	INTERGENIC
SBS	Chr5	16643746	A-T	Homo	INTERGENIC
SBS	Chr5	17201199	G-C	Homo	INTERGENIC
SBS	Chr5	17479242	A-T	Homo	INTERGENIC
SBS	Chr6	4360581	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g059900
SBS	Chr6	10630131	C-A	Hetero	INTRON
SBS	Chr6	10632896	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g119501
SBS	Chr7	9111768	A-T	Homo	INTERGENIC
SBS	Chr7	18840903	A-T	Homo	INTRON
SBS	Chr7	25953264	C-T	Homo	INTERGENIC
SBS	Chr8	9822151	C-T	Hetero	INTRON
SBS	Chr9	8125817	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	8211980	C-G	Hetero	INTERGENIC
SBS	Chr9	22515847	C-A	Hetero	INTERGENIC
SBS	Chr10	6365474	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g043200
SBS	Chr10	12638644	A-G	Hetero	INTERGENIC
SBS	Chr10	16643323	C-T	Homo	INTRON
SBS	Chr10	22230974	G-A	Hetero	INTRON
SBS	Chr11	17802763	A-G	Hetero	INTERGENIC
SBS	Chr11	21040914	T-A	Hetero	INTERGENIC
SBS	Chr12	7965132	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1362001	1432000	69999	14
Deletion	Chr9	5221932	5221941	9
Deletion	Chr2	6638595	6638597	2
Deletion	Chr6	7758888	7758895	7
Deletion	Chr1	11883150	11883151	1
Deletion	Chr3	14160177	14160178	1
Deletion	Chr3	15270636	15270637	1
Deletion	Chr3	15875796	15875800	4
Deletion	Chr8	16678551	16678556	5
Deletion	Chr9	18446498	18446500	2
Deletion	Chr5	21715980	21716005	25
Deletion	Chr5	22153502	22153509	7
Deletion	Chr3	25806604	25806608	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6570422	6766588
Inversion	Chr1	30717538	30794898	OsKitaake01g304900
Inversion	Chr1	30717539	30794903	OsKitaake01g304900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes