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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-231 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-231 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5584187 G-T Homo INTERGENIC
SBS Chr1 36999780 C-T Homo UTR_5_PRIME
SBS Chr2 3393847 C-A Hetero INTERGENIC
SBS Chr2 8125565 T-C Hetero INTERGENIC
SBS Chr2 9187348 A-G Hetero INTERGENIC
SBS Chr2 9374844 C-T Hetero INTERGENIC
SBS Chr2 9374845 C-T Hetero INTERGENIC
SBS Chr2 24670705 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g245400
SBS Chr2 24670706 C-A Hetero STOP_GAINED OsKitaake02g245400
SBS Chr2 34759507 C-T Hetero INTERGENIC
SBS Chr3 2644080 C-A Homo INTERGENIC
SBS Chr3 5719156 C-T Homo INTERGENIC
SBS Chr3 11621338 C-A Homo INTERGENIC
SBS Chr3 14815213 G-T Hetero INTERGENIC
SBS Chr3 19791393 T-C Hetero INTERGENIC
SBS Chr3 25367338 T-A Homo INTERGENIC
SBS Chr3 37226813 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g417000
SBS Chr3 37226814 A-C Hetero SYNONYMOUS_CODING
SBS Chr4 4068714 C-T Hetero INTERGENIC
SBS Chr4 4181634 G-A Hetero INTERGENIC
SBS Chr4 5113163 C-A Hetero INTERGENIC
SBS Chr4 22859944 G-A Hetero INTERGENIC
SBS Chr4 33573131 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g277400
SBS Chr5 25092607 G-A Hetero INTERGENIC
SBS Chr6 9931879 G-A Hetero INTERGENIC
SBS Chr6 17178602 G-C Hetero INTERGENIC
SBS Chr6 23394617 C-T Hetero INTERGENIC
SBS Chr7 11190514 C-A Hetero INTERGENIC
SBS Chr8 17325625 G-A Hetero INTERGENIC
SBS Chr8 25368035 A-C Hetero INTERGENIC
SBS Chr9 4336154 C-T Homo INTERGENIC
SBS Chr9 15782860 T-C Hetero INTRON
SBS Chr9 16585534 T-A Hetero INTERGENIC
SBS Chr10 4863984 G-A Hetero INTERGENIC
SBS Chr10 4863985 T-A Hetero INTERGENIC
SBS Chr11 759083 A-G Hetero UTR_5_PRIME
SBS Chr11 4550849 G-A Homo INTRON
SBS Chr11 14576945 G-A Hetero INTERGENIC
SBS Chr11 24330275 C-T Hetero INTERGENIC
SBS Chr12 3239277 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g046100
SBS Chr12 5065930 G-A Hetero INTERGENIC
SBS Chr12 15725990 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 725925 725937 12
Deletion Chr4 798349 798358 9
Deletion Chr10 1872297 1872298 1
Deletion Chr1 1941655 1941667 12
Deletion Chr2 4695675 4695682 7
Deletion Chr5 5917024 5917044 20
Deletion Chr2 7237069 7237082 13 OsKitaake02g097000
Deletion Chr1 7709179 7709182 3
Deletion Chr9 11692060 11692062 2
Deletion Chr2 11692859 11692864 5
Deletion Chr2 12796480 12796498 18
Deletion Chr2 16813001 17522000 708999 38
Deletion Chr10 21035092 21035097 5
Deletion Chr1 23429360 23429366 6
Deletion Chr4 24034659 24034660 1
Deletion Chr4 24525186 24525188 2
Deletion Chr8 29160849 29160858 9
Deletion Chr3 29659736 29659738 2
Deletion Chr1 37352948 37352957 9 OsKitaake01g398800

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 25150518 25150521 2
Insertion Chr8 8067714 8067716 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4196032 4196319

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5584187	G-T	Homo	INTERGENIC
SBS	Chr1	36999780	C-T	Homo	UTR_5_PRIME
SBS	Chr2	3393847	C-A	Hetero	INTERGENIC
SBS	Chr2	8125565	T-C	Hetero	INTERGENIC
SBS	Chr2	9187348	A-G	Hetero	INTERGENIC
SBS	Chr2	9374844	C-T	Hetero	INTERGENIC
SBS	Chr2	9374845	C-T	Hetero	INTERGENIC
SBS	Chr2	24670705	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g245400
SBS	Chr2	24670706	C-A	Hetero	STOP_GAINED	OsKitaake02g245400
SBS	Chr2	34759507	C-T	Hetero	INTERGENIC
SBS	Chr3	2644080	C-A	Homo	INTERGENIC
SBS	Chr3	5719156	C-T	Homo	INTERGENIC
SBS	Chr3	11621338	C-A	Homo	INTERGENIC
SBS	Chr3	14815213	G-T	Hetero	INTERGENIC
SBS	Chr3	19791393	T-C	Hetero	INTERGENIC
SBS	Chr3	25367338	T-A	Homo	INTERGENIC
SBS	Chr3	37226813	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g417000
SBS	Chr3	37226814	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	4068714	C-T	Hetero	INTERGENIC
SBS	Chr4	4181634	G-A	Hetero	INTERGENIC
SBS	Chr4	5113163	C-A	Hetero	INTERGENIC
SBS	Chr4	22859944	G-A	Hetero	INTERGENIC
SBS	Chr4	33573131	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g277400
SBS	Chr5	25092607	G-A	Hetero	INTERGENIC
SBS	Chr6	9931879	G-A	Hetero	INTERGENIC
SBS	Chr6	17178602	G-C	Hetero	INTERGENIC
SBS	Chr6	23394617	C-T	Hetero	INTERGENIC
SBS	Chr7	11190514	C-A	Hetero	INTERGENIC
SBS	Chr8	17325625	G-A	Hetero	INTERGENIC
SBS	Chr8	25368035	A-C	Hetero	INTERGENIC
SBS	Chr9	4336154	C-T	Homo	INTERGENIC
SBS	Chr9	15782860	T-C	Hetero	INTRON
SBS	Chr9	16585534	T-A	Hetero	INTERGENIC
SBS	Chr10	4863984	G-A	Hetero	INTERGENIC
SBS	Chr10	4863985	T-A	Hetero	INTERGENIC
SBS	Chr11	759083	A-G	Hetero	UTR_5_PRIME
SBS	Chr11	4550849	G-A	Homo	INTRON
SBS	Chr11	14576945	G-A	Hetero	INTERGENIC
SBS	Chr11	24330275	C-T	Hetero	INTERGENIC
SBS	Chr12	3239277	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g046100
SBS	Chr12	5065930	G-A	Hetero	INTERGENIC
SBS	Chr12	15725990	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	725925	725937	12
Deletion	Chr4	798349	798358	9
Deletion	Chr10	1872297	1872298	1
Deletion	Chr1	1941655	1941667	12
Deletion	Chr2	4695675	4695682	7
Deletion	Chr5	5917024	5917044	20
Deletion	Chr2	7237069	7237082	13	OsKitaake02g097000
Deletion	Chr1	7709179	7709182	3
Deletion	Chr9	11692060	11692062	2
Deletion	Chr2	11692859	11692864	5
Deletion	Chr2	12796480	12796498	18
Deletion	Chr2	16813001	17522000	708999	38
Deletion	Chr10	21035092	21035097	5
Deletion	Chr1	23429360	23429366	6
Deletion	Chr4	24034659	24034660	1
Deletion	Chr4	24525186	24525188	2
Deletion	Chr8	29160849	29160858	9
Deletion	Chr3	29659736	29659738	2
Deletion	Chr1	37352948	37352957	9	OsKitaake01g398800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4196032	4196319

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes