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Mutant Information

Mutant Name	FN-232 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-232 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3882601 C-T Hetero INTERGENIC
SBS Chr1 25765955 C-G Hetero INTERGENIC
SBS Chr1 42084768 T-A Homo INTERGENIC
SBS Chr2 518181 C-T Hetero INTRON
SBS Chr2 4905428 T-A Homo INTERGENIC
SBS Chr2 16373380 G-A Homo INTERGENIC
SBS Chr2 18823722 G-A Hetero INTERGENIC
SBS Chr2 19839601 T-G Hetero INTERGENIC
SBS Chr2 22577995 C-T Hetero INTERGENIC
SBS Chr2 26800016 G-A Hetero INTRON
SBS Chr2 27031780 T-G Hetero INTRON
SBS Chr3 26969235 G-A Hetero UTR_3_PRIME
SBS Chr3 29446471 A-G Hetero INTERGENIC
SBS Chr3 32697038 G-T Hetero INTERGENIC
SBS Chr3 36386608 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g403900
SBS Chr3 36386615 T-C Hetero SPLICE_SITE_REGION
SBS Chr3 37308751 C-G Hetero INTERGENIC
SBS Chr4 4446692 T-C Hetero INTERGENIC
SBS Chr4 5836408 C-T Hetero INTERGENIC
SBS Chr4 5836409 G-T Hetero INTERGENIC
SBS Chr5 19243746 G-A Hetero INTERGENIC
SBS Chr5 27807439 A-G Hetero INTERGENIC
SBS Chr6 6992672 A-T Hetero INTERGENIC
SBS Chr6 29174278 A-T Hetero INTERGENIC
SBS Chr7 8629322 A-G Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 9948051 C-T Homo INTERGENIC
SBS Chr8 20486086 C-T Hetero INTERGENIC
SBS Chr8 22989497 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 7847643 A-G Hetero INTERGENIC
SBS Chr10 3683875 A-G Hetero INTERGENIC
SBS Chr10 6590537 A-G Hetero INTERGENIC
SBS Chr10 14289870 T-C Homo INTERGENIC
SBS Chr11 2419743 T-C Hetero UTR_3_PRIME
SBS Chr11 8335620 C-T Hetero INTERGENIC
SBS Chr11 9378053 C-T Hetero INTERGENIC
SBS Chr11 9697666 A-C Hetero INTERGENIC
SBS Chr11 9839984 G-A Hetero INTERGENIC
SBS Chr11 14088024 A-T Hetero INTRON
SBS Chr11 22788486 C-T Homo INTRON
SBS Chr12 6521698 C-T Hetero INTERGENIC
SBS Chr12 13067867 C-T Hetero INTERGENIC
SBS Chr12 16468618 C-T Hetero INTERGENIC
SBS Chr12 21358427 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1187648 1187654 6
Deletion Chr7 3602001 3621000 18999 2
Deletion Chr12 5861162 5861169 7
Deletion Chr7 7317870 7317871 1
Deletion Chr1 7343832 7343836 4
Deletion Chr7 7620490 7620502 12
Deletion Chr3 8890521 8890533 12
Deletion Chr11 9697678 9697686 8
Deletion Chr1 10269037 10269040 3
Deletion Chr12 10765859 10765864 5
Deletion Chr6 11286970 11286974 4
Deletion Chr8 12203955 12203968 13
Deletion Chr3 13162035 13162036 1
Deletion Chr11 18947299 18947300 1
Deletion Chr12 22327480 22327482 2
Deletion Chr2 23423444 23423445 1
Deletion Chr1 25544104 25544108 4
Deletion Chr3 33143913 33143914 1
Deletion Chr1 39233533 39233543 10
Deletion Chr1 40382143 40382150 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 22376624 22376626 1
Insertion Chr5 22077078 22077081 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 132061 758583 OsKitaake03g001800
Inversion Chr7 3603009 3634218 OsKitaake07g046000
Inversion Chr7 3621506 3634221
Inversion Chr12 5571143 5905458
Inversion Chr7 16419925 16465186
Inversion Chr7 16421106 16465195
Inversion Chr1 25783515 25836258 OsKitaake01g250600

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 378917 Chr2 5767872 OsKitaake08g005700
Translocation Chr8 378926 Chr2 5767875 OsKitaake08g005700
Translocation Chr5 1633258 Chr3 132065 2
Translocation Chr7 16420356 Chr5 1650201
Translocation Chr9 20481337 Chr4 1616994 OsKitaake04g010900
Translocation Chr9 20481429 Chr4 1617034 OsKitaake04g010900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3882601	C-T	Hetero	INTERGENIC
SBS	Chr1	25765955	C-G	Hetero	INTERGENIC
SBS	Chr1	42084768	T-A	Homo	INTERGENIC
SBS	Chr2	518181	C-T	Hetero	INTRON
SBS	Chr2	4905428	T-A	Homo	INTERGENIC
SBS	Chr2	16373380	G-A	Homo	INTERGENIC
SBS	Chr2	18823722	G-A	Hetero	INTERGENIC
SBS	Chr2	19839601	T-G	Hetero	INTERGENIC
SBS	Chr2	22577995	C-T	Hetero	INTERGENIC
SBS	Chr2	26800016	G-A	Hetero	INTRON
SBS	Chr2	27031780	T-G	Hetero	INTRON
SBS	Chr3	26969235	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	29446471	A-G	Hetero	INTERGENIC
SBS	Chr3	32697038	G-T	Hetero	INTERGENIC
SBS	Chr3	36386608	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g403900
SBS	Chr3	36386615	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr3	37308751	C-G	Hetero	INTERGENIC
SBS	Chr4	4446692	T-C	Hetero	INTERGENIC
SBS	Chr4	5836408	C-T	Hetero	INTERGENIC
SBS	Chr4	5836409	G-T	Hetero	INTERGENIC
SBS	Chr5	19243746	G-A	Hetero	INTERGENIC
SBS	Chr5	27807439	A-G	Hetero	INTERGENIC
SBS	Chr6	6992672	A-T	Hetero	INTERGENIC
SBS	Chr6	29174278	A-T	Hetero	INTERGENIC
SBS	Chr7	8629322	A-G	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	9948051	C-T	Homo	INTERGENIC
SBS	Chr8	20486086	C-T	Hetero	INTERGENIC
SBS	Chr8	22989497	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	7847643	A-G	Hetero	INTERGENIC
SBS	Chr10	3683875	A-G	Hetero	INTERGENIC
SBS	Chr10	6590537	A-G	Hetero	INTERGENIC
SBS	Chr10	14289870	T-C	Homo	INTERGENIC
SBS	Chr11	2419743	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	8335620	C-T	Hetero	INTERGENIC
SBS	Chr11	9378053	C-T	Hetero	INTERGENIC
SBS	Chr11	9697666	A-C	Hetero	INTERGENIC
SBS	Chr11	9839984	G-A	Hetero	INTERGENIC
SBS	Chr11	14088024	A-T	Hetero	INTRON
SBS	Chr11	22788486	C-T	Homo	INTRON
SBS	Chr12	6521698	C-T	Hetero	INTERGENIC
SBS	Chr12	13067867	C-T	Hetero	INTERGENIC
SBS	Chr12	16468618	C-T	Hetero	INTERGENIC
SBS	Chr12	21358427	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1187648	1187654	6
Deletion	Chr7	3602001	3621000	18999	2
Deletion	Chr12	5861162	5861169	7
Deletion	Chr7	7317870	7317871	1
Deletion	Chr1	7343832	7343836	4
Deletion	Chr7	7620490	7620502	12
Deletion	Chr3	8890521	8890533	12
Deletion	Chr11	9697678	9697686	8
Deletion	Chr1	10269037	10269040	3
Deletion	Chr12	10765859	10765864	5
Deletion	Chr6	11286970	11286974	4
Deletion	Chr8	12203955	12203968	13
Deletion	Chr3	13162035	13162036	1
Deletion	Chr11	18947299	18947300	1
Deletion	Chr12	22327480	22327482	2
Deletion	Chr2	23423444	23423445	1
Deletion	Chr1	25544104	25544108	4
Deletion	Chr3	33143913	33143914	1
Deletion	Chr1	39233533	39233543	10
Deletion	Chr1	40382143	40382150	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	132061	758583	OsKitaake03g001800
Inversion	Chr7	3603009	3634218	OsKitaake07g046000
Inversion	Chr7	3621506	3634221
Inversion	Chr12	5571143	5905458
Inversion	Chr7	16419925	16465186
Inversion	Chr7	16421106	16465195
Inversion	Chr1	25783515	25836258	OsKitaake01g250600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes