Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-233 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-233 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26139580 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g254800 |
| SBS | Chr2 | 11418191 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27700039 | A-G | Homo | INTRON | |
| SBS | Chr2 | 34401022 | C-T | Homo | INTRON | |
| SBS | Chr3 | 5406019 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 34275969 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18505079 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27608714 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 34603119 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 34931673 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3534458 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 22472345 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4999199 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 27657876 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 19387143 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 21721198 | C-T | Hetero | SPLICE_SITE_DONOR | OsKitaake08g164200 |
| SBS | Chr10 | 21985993 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11234324 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 13392643 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 16240442 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10557286 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 12057022 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19582674 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 21648335 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24885482 | C-A | Hetero | UTR_5_PRIME |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 113735 | 113739 | 4 | |
| Deletion | Chr7 | 3718393 | 3718420 | 27 | OsKitaake07g047900 |
| Deletion | Chr9 | 4628911 | 4629084 | 173 | |
| Deletion | Chr1 | 5696987 | 5697008 | 21 | |
| Deletion | Chr9 | 7989169 | 7989173 | 4 | |
| Deletion | Chr7 | 9090078 | 9090093 | 15 | |
| Deletion | Chr3 | 10863704 | 10863705 | 1 | |
| Deletion | Chr7 | 13002001 | 13049000 | 46999 | 3 |
| Deletion | Chr2 | 17942323 | 17942324 | 1 | |
| Deletion | Chr2 | 20741389 | 20741400 | 11 | |
| Deletion | Chr10 | 20753392 | 20753393 | 1 | |
| Deletion | Chr4 | 21138222 | 21138228 | 6 | OsKitaake04g116200 |
| Deletion | Chr6 | 24213942 | 24213946 | 4 | |
| Deletion | Chr6 | 24702948 | 24702949 | 1 | |
| Deletion | Chr7 | 24739561 | 24739566 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 8263843 | 8263846 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 5900686 | 5910523 |