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Mutant Information

Mutant Name	FN-234 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-234 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31505776 G-T Hetero INTERGENIC
SBS Chr1 35081406 C-T Homo INTRON
SBS Chr1 37291672 C-A Hetero INTERGENIC
SBS Chr1 37933490 G-A Hetero INTERGENIC
SBS Chr2 3924701 T-A Homo INTERGENIC
SBS Chr2 3924841 A-G Homo INTERGENIC
SBS Chr2 23618891 T-C Homo INTERGENIC
SBS Chr3 23061925 C-T Homo INTERGENIC
SBS Chr3 30206394 G-A Hetero INTERGENIC
SBS Chr3 33240515 G-A Hetero INTERGENIC
SBS Chr4 6517774 C-A Homo UTR_3_PRIME
SBS Chr4 6517788 A-G Homo UTR_3_PRIME
SBS Chr4 18499603 G-A Hetero INTERGENIC
SBS Chr5 1938090 C-T Hetero INTERGENIC
SBS Chr5 11579239 G-A Homo INTERGENIC
SBS Chr5 25240524 A-T Homo INTERGENIC
SBS Chr6 1686309 T-A Hetero SYNONYMOUS_CODING
SBS Chr6 12145225 T-A Hetero INTERGENIC
SBS Chr7 5231341 A-T Hetero INTERGENIC
SBS Chr7 5522071 C-T Hetero INTERGENIC
SBS Chr8 8905355 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 13758695 C-T Hetero INTERGENIC
SBS Chr8 21833170 A-G Homo INTERGENIC
SBS Chr8 24148888 G-T Homo INTERGENIC
SBS Chr8 28665697 C-T Homo INTERGENIC
SBS Chr9 2156823 A-G Hetero INTERGENIC
SBS Chr10 11167094 T-A Hetero INTERGENIC
SBS Chr10 13784633 C-T Hetero INTRON
SBS Chr10 16990338 A-C Hetero INTERGENIC
SBS Chr10 17187642 A-T Hetero INTERGENIC
SBS Chr10 17187645 G-A Hetero INTERGENIC
SBS Chr12 8086237 C-T Homo INTERGENIC
SBS Chr12 19775701 T-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 19587 19593 6 OsKitaake12g000100
Deletion Chr5 3923545 3923549 4
Deletion Chr6 5742059 5742065 6
Deletion Chr9 5815051 5815055 4
Deletion Chr4 6577517 6577525 8
Deletion Chr2 9730164 9730174 10
Deletion Chr9 10339178 10339187 9
Deletion Chr1 10479556 10479565 9
Deletion Chr10 10674001 10695000 20999 OsKitaake10g063100
Deletion Chr3 11223628 11223630 2
Deletion Chr8 18471777 18471780 3
Deletion Chr10 19217218 19217219 1
Deletion Chr2 20078349 20078355 6 OsKitaake02g195800
Deletion Chr10 20289975 20289977 2
Deletion Chr4 21425279 21425287 8
Deletion Chr6 23791604 23791612 8
Deletion Chr4 27755346 27755347 1
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr2 31959001 31983000 23999 3
Deletion Chr1 34010015 34010024 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18735080 18735083 2
Insertion Chr5 17919362 17919365 2
Insertion Chr5 29899713 29899717 3
Insertion Chr6 9108864 9108867 2
Insertion Chr6 9912589 9912592 2
Insertion Chr8 28378891 28378895 3 OsKitaake08g239900

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13783036 13896317 OsKitaake10g084200
Inversion Chr10 13783065 13896317 OsKitaake10g084200
Inversion Chr2 28514761 28572345
Inversion Chr2 28514770 28572346

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2949391 Chr6 5747713

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31505776	G-T	Hetero	INTERGENIC
SBS	Chr1	35081406	C-T	Homo	INTRON
SBS	Chr1	37291672	C-A	Hetero	INTERGENIC
SBS	Chr1	37933490	G-A	Hetero	INTERGENIC
SBS	Chr2	3924701	T-A	Homo	INTERGENIC
SBS	Chr2	3924841	A-G	Homo	INTERGENIC
SBS	Chr2	23618891	T-C	Homo	INTERGENIC
SBS	Chr3	23061925	C-T	Homo	INTERGENIC
SBS	Chr3	30206394	G-A	Hetero	INTERGENIC
SBS	Chr3	33240515	G-A	Hetero	INTERGENIC
SBS	Chr4	6517774	C-A	Homo	UTR_3_PRIME
SBS	Chr4	6517788	A-G	Homo	UTR_3_PRIME
SBS	Chr4	18499603	G-A	Hetero	INTERGENIC
SBS	Chr5	1938090	C-T	Hetero	INTERGENIC
SBS	Chr5	11579239	G-A	Homo	INTERGENIC
SBS	Chr5	25240524	A-T	Homo	INTERGENIC
SBS	Chr6	1686309	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	12145225	T-A	Hetero	INTERGENIC
SBS	Chr7	5231341	A-T	Hetero	INTERGENIC
SBS	Chr7	5522071	C-T	Hetero	INTERGENIC
SBS	Chr8	8905355	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	13758695	C-T	Hetero	INTERGENIC
SBS	Chr8	21833170	A-G	Homo	INTERGENIC
SBS	Chr8	24148888	G-T	Homo	INTERGENIC
SBS	Chr8	28665697	C-T	Homo	INTERGENIC
SBS	Chr9	2156823	A-G	Hetero	INTERGENIC
SBS	Chr10	11167094	T-A	Hetero	INTERGENIC
SBS	Chr10	13784633	C-T	Hetero	INTRON
SBS	Chr10	16990338	A-C	Hetero	INTERGENIC
SBS	Chr10	17187642	A-T	Hetero	INTERGENIC
SBS	Chr10	17187645	G-A	Hetero	INTERGENIC
SBS	Chr12	8086237	C-T	Homo	INTERGENIC
SBS	Chr12	19775701	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	19587	19593	6	OsKitaake12g000100
Deletion	Chr5	3923545	3923549	4
Deletion	Chr6	5742059	5742065	6
Deletion	Chr9	5815051	5815055	4
Deletion	Chr4	6577517	6577525	8
Deletion	Chr2	9730164	9730174	10
Deletion	Chr9	10339178	10339187	9
Deletion	Chr1	10479556	10479565	9
Deletion	Chr10	10674001	10695000	20999	OsKitaake10g063100
Deletion	Chr3	11223628	11223630	2
Deletion	Chr8	18471777	18471780	3
Deletion	Chr10	19217218	19217219	1
Deletion	Chr2	20078349	20078355	6	OsKitaake02g195800
Deletion	Chr10	20289975	20289977	2
Deletion	Chr4	21425279	21425287	8
Deletion	Chr6	23791604	23791612	8
Deletion	Chr4	27755346	27755347	1
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr2	31959001	31983000	23999	3
Deletion	Chr1	34010015	34010024	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13783036	13896317	OsKitaake10g084200
Inversion	Chr10	13783065	13896317	OsKitaake10g084200
Inversion	Chr2	28514761	28572345
Inversion	Chr2	28514770	28572346

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes