Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-235 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-235 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1467858 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 1467860 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 38941137 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 40236230 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17180788 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30539934 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 30541731 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 30541732 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8314850 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 34585561 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 11360389 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17835416 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 17993090 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6107541 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12443507 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18430774 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1947110 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11223771 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12889686 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24292012 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 29191603 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11679204 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11722717 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11722718 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11750273 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2332117 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19178237 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8213872 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 9349834 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 522218 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9233331 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 26170035 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26190442 | A-G | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 748362 | 748365 | 3 | |
| Deletion | Chr8 | 1936209 | 1936210 | 1 | |
| Deletion | Chr1 | 4961453 | 4961456 | 3 | |
| Deletion | Chr11 | 8212031 | 8212033 | 2 | OsKitaake11g090100 |
| Deletion | Chr9 | 10433001 | 10517000 | 83999 | 6 |
| Deletion | Chr9 | 11596320 | 11596321 | 1 | |
| Deletion | Chr8 | 18704697 | 18704699 | 2 | |
| Deletion | Chr4 | 21239077 | 21239078 | 1 | |
| Deletion | Chr1 | 23981589 | 23981590 | 1 | |
| Deletion | Chr6 | 25934149 | 25934155 | 6 | |
| Deletion | Chr6 | 27076762 | 27076767 | 5 | |
| Deletion | Chr1 | 27568415 | 27568417 | 2 | |
| Deletion | Chr2 | 28104973 | 28104976 | 3 | |
| Deletion | Chr1 | 31269340 | 31269344 | 4 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 2213797 | 2213804 | 6 | OsKitaake01g027800  |
| Insertion | Chr6 | 9913468 | 9913471 | 2 | |
| Insertion | Chr12 | 22607217 | 22607219 | 1 | |
| Insertion | Chr5 | 10439397 | 10439399 | 1 |