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Mutant Information

Mutant Name	FN-236 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-236 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3799330 T-A Hetero INTERGENIC
SBS Chr1 4191864 G-A Hetero STOP_GAINED OsKitaake01g056008
SBS Chr1 16193659 G-A Hetero INTERGENIC
SBS Chr1 17622769 C-T Hetero INTERGENIC
SBS Chr1 26650067 T-A Hetero INTERGENIC
SBS Chr1 41133439 G-A Hetero INTERGENIC
SBS Chr2 8461272 T-A Hetero INTERGENIC
SBS Chr2 8461302 C-T Hetero INTERGENIC
SBS Chr2 12716062 G-A Hetero INTERGENIC
SBS Chr2 12716063 C-A Hetero INTERGENIC
SBS Chr2 18045582 A-T Hetero INTERGENIC
SBS Chr2 25051186 C-T Homo INTERGENIC
SBS Chr2 35749496 C-T Hetero INTERGENIC
SBS Chr4 13731134 A-G Hetero INTERGENIC
SBS Chr4 19099283 A-T Homo INTRON
SBS Chr4 19304979 A-G Homo INTERGENIC
SBS Chr4 35756725 A-G Hetero INTERGENIC
SBS Chr5 1743801 A-T Homo INTERGENIC
SBS Chr5 15154731 C-T Hetero INTERGENIC
SBS Chr5 19834036 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g157600
SBS Chr5 20595486 T-C Homo INTERGENIC
SBS Chr5 21000545 C-T Hetero UTR_3_PRIME
SBS Chr5 26466734 A-T Hetero INTERGENIC
SBS Chr5 26466736 A-G Hetero INTERGENIC
SBS Chr6 8663770 T-C Hetero INTERGENIC
SBS Chr6 29460604 G-A Hetero INTERGENIC
SBS Chr6 29923466 C-G Hetero INTRON
SBS Chr8 13001122 A-T Hetero INTERGENIC
SBS Chr10 14812110 G-A Homo INTERGENIC
SBS Chr10 23384581 G-C Homo INTERGENIC
SBS Chr11 12123522 G-A Homo INTERGENIC
SBS Chr11 19552850 G-A Homo INTERGENIC
SBS Chr11 23824108 C-G Hetero INTERGENIC
SBS Chr12 639743 T-C Hetero INTERGENIC
SBS Chr12 18349809 A-G Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 45670 45676 6
Deletion Chr5 1615706 1615709 3
Deletion Chr12 3834802 3834813 11
Deletion Chr1 10283353 10283356 3
Deletion Chr4 12095578 12095581 3
Deletion Chr6 12880830 12880831 1 OsKitaake06g137050
Deletion Chr10 14570368 14570377 9
Deletion Chr7 16655806 16655829 23
Deletion Chr7 16671195 16671204 9
Deletion Chr10 18511071 18511072 1
Deletion Chr5 19834046 19834054 8 OsKitaake05g157600
Deletion Chr9 20596682 20596684 2
Deletion Chr6 22908083 22908095 12
Deletion Chr4 23629091 23629095 4
Deletion Chr4 25137616 25137625 9
Deletion Chr7 28958493 28958494 1
Deletion Chr4 28999054 28999061 7
Deletion Chr4 29002994 29002995 1
Deletion Chr5 29918840 29918942 102
Deletion Chr1 34665191 34665196 5
Deletion Chr1 40236002 40236009 7

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 11549474 11623235 OsKitaake09g072100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3799330	T-A	Hetero	INTERGENIC
SBS	Chr1	4191864	G-A	Hetero	STOP_GAINED	OsKitaake01g056008
SBS	Chr1	16193659	G-A	Hetero	INTERGENIC
SBS	Chr1	17622769	C-T	Hetero	INTERGENIC
SBS	Chr1	26650067	T-A	Hetero	INTERGENIC
SBS	Chr1	41133439	G-A	Hetero	INTERGENIC
SBS	Chr2	8461272	T-A	Hetero	INTERGENIC
SBS	Chr2	8461302	C-T	Hetero	INTERGENIC
SBS	Chr2	12716062	G-A	Hetero	INTERGENIC
SBS	Chr2	12716063	C-A	Hetero	INTERGENIC
SBS	Chr2	18045582	A-T	Hetero	INTERGENIC
SBS	Chr2	25051186	C-T	Homo	INTERGENIC
SBS	Chr2	35749496	C-T	Hetero	INTERGENIC
SBS	Chr4	13731134	A-G	Hetero	INTERGENIC
SBS	Chr4	19099283	A-T	Homo	INTRON
SBS	Chr4	19304979	A-G	Homo	INTERGENIC
SBS	Chr4	35756725	A-G	Hetero	INTERGENIC
SBS	Chr5	1743801	A-T	Homo	INTERGENIC
SBS	Chr5	15154731	C-T	Hetero	INTERGENIC
SBS	Chr5	19834036	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g157600
SBS	Chr5	20595486	T-C	Homo	INTERGENIC
SBS	Chr5	21000545	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	26466734	A-T	Hetero	INTERGENIC
SBS	Chr5	26466736	A-G	Hetero	INTERGENIC
SBS	Chr6	8663770	T-C	Hetero	INTERGENIC
SBS	Chr6	29460604	G-A	Hetero	INTERGENIC
SBS	Chr6	29923466	C-G	Hetero	INTRON
SBS	Chr8	13001122	A-T	Hetero	INTERGENIC
SBS	Chr10	14812110	G-A	Homo	INTERGENIC
SBS	Chr10	23384581	G-C	Homo	INTERGENIC
SBS	Chr11	12123522	G-A	Homo	INTERGENIC
SBS	Chr11	19552850	G-A	Homo	INTERGENIC
SBS	Chr11	23824108	C-G	Hetero	INTERGENIC
SBS	Chr12	639743	T-C	Hetero	INTERGENIC
SBS	Chr12	18349809	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	45670	45676	6
Deletion	Chr5	1615706	1615709	3
Deletion	Chr12	3834802	3834813	11
Deletion	Chr1	10283353	10283356	3
Deletion	Chr4	12095578	12095581	3
Deletion	Chr6	12880830	12880831	1	OsKitaake06g137050
Deletion	Chr10	14570368	14570377	9
Deletion	Chr7	16655806	16655829	23
Deletion	Chr7	16671195	16671204	9
Deletion	Chr10	18511071	18511072	1
Deletion	Chr5	19834046	19834054	8	OsKitaake05g157600
Deletion	Chr9	20596682	20596684	2
Deletion	Chr6	22908083	22908095	12
Deletion	Chr4	23629091	23629095	4
Deletion	Chr4	25137616	25137625	9
Deletion	Chr7	28958493	28958494	1
Deletion	Chr4	28999054	28999061	7
Deletion	Chr4	29002994	29002995	1
Deletion	Chr5	29918840	29918942	102
Deletion	Chr1	34665191	34665196	5
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11549474	11623235	OsKitaake09g072100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes