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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-237 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-237 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14357760 G-A Hetero INTERGENIC
SBS Chr1 17889413 G-A Homo INTERGENIC
SBS Chr2 10535519 G-A Hetero INTERGENIC
SBS Chr2 12425326 T-A Hetero INTERGENIC
SBS Chr2 17798921 C-T Hetero INTERGENIC
SBS Chr2 37121665 T-A Homo INTRON
SBS Chr3 24817535 G-A Homo INTERGENIC
SBS Chr6 15786990 C-T Homo INTERGENIC
SBS Chr6 17890776 T-C Hetero INTERGENIC
SBS Chr6 18074405 C-G Hetero INTERGENIC
SBS Chr7 13215356 G-A Hetero INTERGENIC
SBS Chr8 5837208 A-C Hetero INTERGENIC
SBS Chr8 21008111 C-A Hetero UTR_3_PRIME
SBS Chr8 25389469 T-C Hetero INTERGENIC
SBS Chr8 25834162 A-C Hetero INTERGENIC
SBS Chr9 6262152 G-A Homo INTERGENIC
SBS Chr9 8973258 G-A Homo INTRON
SBS Chr9 20556624 T-A Hetero INTERGENIC
SBS Chr10 20059809 T-G Hetero INTERGENIC
SBS Chr10 21104296 G-A Hetero INTERGENIC
SBS Chr11 21257746 G-T Hetero INTERGENIC
SBS Chr11 24428555 T-A Hetero INTERGENIC
SBS Chr11 29397063 T-C Hetero INTERGENIC
SBS Chr12 12384879 G-C Hetero INTERGENIC
SBS Chr12 14947930 G-A Hetero INTERGENIC
SBS Chr12 16114421 A-G Hetero INTERGENIC
SBS Chr12 17434001 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3405122 3405124 2 OsKitaake06g047800
Deletion Chr10 8305641 8305648 7
Deletion Chr9 11555591 11555592 1
Deletion Chr8 12823002 12823003 1
Deletion Chr11 13627337 13627339 2
Deletion Chr2 14369965 14369966 1 OsKitaake02g154800
Deletion Chr2 15247001 15261000 13999 2
Deletion Chr12 15312620 15312711 91
Deletion Chr3 16078001 16099000 20999
Deletion Chr3 17053433 17053436 3
Deletion Chr7 20058039 20058041 2
Deletion Chr6 28478857 28478867 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 33634317 33634321 3
Insertion Chr8 20497599 20497602 2
Insertion Chr7 8498072 8498074 1
Insertion Chr7 11984659 11984661 1
Insertion Chr12 16125353 16125355 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 14729551 15241276
Inversion Chr2 15242187 15261278
Inversion Chr10 23561089 23864317 2
Inversion Chr10 23864334 23945197 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4535277 Chr2 15241281
Translocation Chr8 4535282 Chr2 17942974

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14357760	G-A	Hetero	INTERGENIC
SBS	Chr1	17889413	G-A	Homo	INTERGENIC
SBS	Chr2	10535519	G-A	Hetero	INTERGENIC
SBS	Chr2	12425326	T-A	Hetero	INTERGENIC
SBS	Chr2	17798921	C-T	Hetero	INTERGENIC
SBS	Chr2	37121665	T-A	Homo	INTRON
SBS	Chr3	24817535	G-A	Homo	INTERGENIC
SBS	Chr6	15786990	C-T	Homo	INTERGENIC
SBS	Chr6	17890776	T-C	Hetero	INTERGENIC
SBS	Chr6	18074405	C-G	Hetero	INTERGENIC
SBS	Chr7	13215356	G-A	Hetero	INTERGENIC
SBS	Chr8	5837208	A-C	Hetero	INTERGENIC
SBS	Chr8	21008111	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	25389469	T-C	Hetero	INTERGENIC
SBS	Chr8	25834162	A-C	Hetero	INTERGENIC
SBS	Chr9	6262152	G-A	Homo	INTERGENIC
SBS	Chr9	8973258	G-A	Homo	INTRON
SBS	Chr9	20556624	T-A	Hetero	INTERGENIC
SBS	Chr10	20059809	T-G	Hetero	INTERGENIC
SBS	Chr10	21104296	G-A	Hetero	INTERGENIC
SBS	Chr11	21257746	G-T	Hetero	INTERGENIC
SBS	Chr11	24428555	T-A	Hetero	INTERGENIC
SBS	Chr11	29397063	T-C	Hetero	INTERGENIC
SBS	Chr12	12384879	G-C	Hetero	INTERGENIC
SBS	Chr12	14947930	G-A	Hetero	INTERGENIC
SBS	Chr12	16114421	A-G	Hetero	INTERGENIC
SBS	Chr12	17434001	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3405122	3405124	2	OsKitaake06g047800
Deletion	Chr10	8305641	8305648	7
Deletion	Chr9	11555591	11555592	1
Deletion	Chr8	12823002	12823003	1
Deletion	Chr11	13627337	13627339	2
Deletion	Chr2	14369965	14369966	1	OsKitaake02g154800
Deletion	Chr2	15247001	15261000	13999	2
Deletion	Chr12	15312620	15312711	91
Deletion	Chr3	16078001	16099000	20999
Deletion	Chr3	17053433	17053436	3
Deletion	Chr7	20058039	20058041	2
Deletion	Chr6	28478857	28478867	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14729551	15241276
Inversion	Chr2	15242187	15261278
Inversion	Chr10	23561089	23864317	2
Inversion	Chr10	23864334	23945197	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes