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| Mutant Information |
|---|
| Mutant Name | FN-238 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-238 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2697507 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 5163643 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26809623 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 33336980 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g340500 |
| SBS | Chr1 | 34798210 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 41192088 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 499155 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 8512399 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16852251 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34423327 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 23865227 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 8466026 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9063897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22448685 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 24893509 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2466160 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 4570198 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 9992900 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 29587305 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 16683719 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16701844 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 504488 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2416538 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 11280475 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13545220 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3192991 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5479469 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16140784 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16140785 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7161687 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Homo | START_GAINED | |
| SBS | Chr11 | 12612247 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18362121 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22994724 | T-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 28714289 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88990 | 88991 | 1 | |
| Deletion | Chr12 | 756993 | 756995 | 2 | |
| Deletion | Chr11 | 4172637 | 4172762 | 125 | |
| Deletion | Chr12 | 4746000 | 4746002 | 2 | |
| Deletion | Chr10 | 5064000 | 5064002 | 2 | |
| Deletion | Chr6 | 6065224 | 6065226 | 2 | OsKitaake06g079800 |
| Deletion | Chr12 | 8212507 | 8212508 | 1 | |
| Deletion | Chr7 | 8519924 | 8519928 | 4 | |
| Deletion | Chr7 | 13976260 | 13976266 | 6 | |
| Deletion | Chr4 | 19565148 | 19565233 | 85 | |
| Deletion | Chr6 | 23507529 | 23507530 | 1 | |
| Deletion | Chr7 | 24121099 | 24121100 | 1 | |
| Deletion | Chr2 | 29914151 | 29914152 | 1 | |
| Deletion | Chr4 | 33660528 | 33660529 | 1 | |
| Deletion | Chr4 | 33893844 | 33893848 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 28849671 | 28849673 | 1 | |
| Insertion | Chr4 | 9891532 | 9891534 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 13588771 | 13618813 |