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| Mutant Information |
|---|
| Mutant Name | FN-24 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-24 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1688471 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 9340800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14112267 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 14112268 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 17087622 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 20013375 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 2113899 | C-G | Hetero | INTRON | |
| SBS | Chr2 | 20796688 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25315825 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 17821511 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19863899 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21160868 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 34129102 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34129103 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1910885 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14603072 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 792211 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4958820 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23151642 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18867939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19032564 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8329959 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1565346 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 1565347 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g023800 |
| SBS | Chr12 | 21836987 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g171500 |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1090489 | 1090496 | 7 | |
| Deletion | Chr2 | 1174571 | 1174574 | 3 | |
| Deletion | Chr12 | 3942897 | 3942902 | 5 | |
| Deletion | Chr3 | 5532941 | 5532942 | 1 | |
| Deletion | Chr9 | 7129001 | 7139000 | 9999 | |
| Deletion | Chr2 | 8175787 | 8175793 | 6 | |
| Deletion | Chr9 | 8488321 | 8488328 | 7 | |
| Deletion | Chr4 | 10033378 | 10033384 | 6 | |
| Deletion | Chr10 | 10529543 | 10529544 | 1 | |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr5 | 12515860 | 12515861 | 1 | |
| Deletion | Chr10 | 13919410 | 13919412 | 2 | OsKitaake10g085500 |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr6 | 22074913 | 22074914 | 1 | |
| Deletion | Chr12 | 22774832 | 22774915 | 83 | |
| Deletion | Chr2 | 23205845 | 23205941 | 96 | |
| Deletion | Chr4 | 25725455 | 25725456 | 1 | OsKitaake04g178600 |
| Deletion | Chr3 | 37711825 | 37711826 | 1 | OsKitaake03g423700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 28558871 | 28558874 | 2 | |
| Insertion | Chr4 | 21605143 | 21605146 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 6133325 | 6786347 | |
| Inversion | Chr5 | 9878657 | 10060615 | OsKitaake05g089900 |
| Inversion | Chr4 | 9907824 | 9914369 | |
| Inversion | Chr2 | 33874899 | 34201554 | OsKitaake02g350700 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 19857543 | Chr2 | 21258684 | |
| Translocation | Chr11 | 19857547 | Chr2 | 21259048 | OsKitaake02g205000 |
| Translocation | Chr11 | 24924406 | Chr3 | 10399016 |