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Mutant Information

Mutant Name	FN-240 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-240 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20891803 A-C Homo INTERGENIC
SBS Chr1 39080455 C-T Homo INTERGENIC
SBS Chr1 39378292 G-A Homo INTRON
SBS Chr2 1080077 G-A Homo INTERGENIC
SBS Chr2 18364920 G-A Hetero INTERGENIC
SBS Chr2 33449100 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 34210047 G-A Hetero INTRON
SBS Chr3 7110518 C-A Homo INTERGENIC
SBS Chr3 9229856 G-A Homo INTERGENIC
SBS Chr3 21666285 T-C Hetero INTERGENIC
SBS Chr4 3709324 G-A Homo INTERGENIC
SBS Chr4 4715193 G-A Homo INTERGENIC
SBS Chr4 10308094 A-T Homo INTERGENIC
SBS Chr4 36764454 C-T Homo INTERGENIC
SBS Chr5 4347487 C-T Homo INTERGENIC
SBS Chr5 13670435 A-T Homo INTERGENIC
SBS Chr5 13670443 A-T Homo INTERGENIC
SBS Chr6 19360373 G-T Homo INTERGENIC
SBS Chr6 19360374 A-T Homo INTERGENIC
SBS Chr6 21952565 A-T Homo INTERGENIC
SBS Chr7 7878358 T-C Hetero INTERGENIC
SBS Chr7 8113040 C-T Hetero INTERGENIC
SBS Chr7 9781586 C-G Hetero INTERGENIC
SBS Chr7 14531968 C-G Hetero INTERGENIC
SBS Chr7 25126280 A-T Hetero INTERGENIC
SBS Chr7 27140076 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 19610217 C-T Homo INTRON
SBS Chr9 5366151 G-A Homo INTERGENIC
SBS Chr10 10101222 T-G Hetero INTERGENIC
SBS Chr11 25420951 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g204500
SBS Chr11 26999587 G-T Homo INTERGENIC
SBS Chr12 23316706 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1073062 1073066 4
Deletion Chr8 1164186 1164187 1
Deletion Chr2 1398388 1398389 1
Deletion Chr4 6958496 6958499 3
Deletion Chr12 11716620 11716785 165
Deletion Chr5 14169001 14182000 12999
Deletion Chr7 16381069 16381159 90
Deletion Chr11 19722394 19722404 10
Deletion Chr5 27767776 27767783 7
Deletion Chr8 28266007 28266008 1
Deletion Chr3 32586076 32586084 8
Deletion Chr2 35791492 35791613 121

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29526971 29526973 1
Insertion Chr4 24909011 24909013 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4044547 4279166
Inversion Chr7 4044551 4279149
Inversion Chr7 8725847 8792700 OsKitaake07g092800
Inversion Chr7 8792708 8878690
Inversion Chr10 10389526 10514170 OsKitaake10g061500
Inversion Chr10 10389551 10514177 OsKitaake10g061500
Inversion Chr5 13885211 13926672 OsKitaake05g107800
Inversion Chr5 13885219 13932299 OsKitaake05g107800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20891803	A-C	Homo	INTERGENIC
SBS	Chr1	39080455	C-T	Homo	INTERGENIC
SBS	Chr1	39378292	G-A	Homo	INTRON
SBS	Chr2	1080077	G-A	Homo	INTERGENIC
SBS	Chr2	18364920	G-A	Hetero	INTERGENIC
SBS	Chr2	33449100	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34210047	G-A	Hetero	INTRON
SBS	Chr3	7110518	C-A	Homo	INTERGENIC
SBS	Chr3	9229856	G-A	Homo	INTERGENIC
SBS	Chr3	21666285	T-C	Hetero	INTERGENIC
SBS	Chr4	3709324	G-A	Homo	INTERGENIC
SBS	Chr4	4715193	G-A	Homo	INTERGENIC
SBS	Chr4	10308094	A-T	Homo	INTERGENIC
SBS	Chr4	36764454	C-T	Homo	INTERGENIC
SBS	Chr5	4347487	C-T	Homo	INTERGENIC
SBS	Chr5	13670435	A-T	Homo	INTERGENIC
SBS	Chr5	13670443	A-T	Homo	INTERGENIC
SBS	Chr6	19360373	G-T	Homo	INTERGENIC
SBS	Chr6	19360374	A-T	Homo	INTERGENIC
SBS	Chr6	21952565	A-T	Homo	INTERGENIC
SBS	Chr7	7878358	T-C	Hetero	INTERGENIC
SBS	Chr7	8113040	C-T	Hetero	INTERGENIC
SBS	Chr7	9781586	C-G	Hetero	INTERGENIC
SBS	Chr7	14531968	C-G	Hetero	INTERGENIC
SBS	Chr7	25126280	A-T	Hetero	INTERGENIC
SBS	Chr7	27140076	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	19610217	C-T	Homo	INTRON
SBS	Chr9	5366151	G-A	Homo	INTERGENIC
SBS	Chr10	10101222	T-G	Hetero	INTERGENIC
SBS	Chr11	25420951	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g204500
SBS	Chr11	26999587	G-T	Homo	INTERGENIC
SBS	Chr12	23316706	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1073062	1073066	4
Deletion	Chr8	1164186	1164187	1
Deletion	Chr2	1398388	1398389	1
Deletion	Chr4	6958496	6958499	3
Deletion	Chr12	11716620	11716785	165
Deletion	Chr5	14169001	14182000	12999
Deletion	Chr7	16381069	16381159	90
Deletion	Chr11	19722394	19722404	10
Deletion	Chr5	27767776	27767783	7
Deletion	Chr8	28266007	28266008	1
Deletion	Chr3	32586076	32586084	8
Deletion	Chr2	35791492	35791613	121

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4044547	4279166
Inversion	Chr7	4044551	4279149
Inversion	Chr7	8725847	8792700	OsKitaake07g092800
Inversion	Chr7	8792708	8878690
Inversion	Chr10	10389526	10514170	OsKitaake10g061500
Inversion	Chr10	10389551	10514177	OsKitaake10g061500
Inversion	Chr5	13885211	13926672	OsKitaake05g107800
Inversion	Chr5	13885219	13932299	OsKitaake05g107800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes