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Mutant Information

Mutant Name	FN-241 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-241 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19982730 T-A Hetero INTERGENIC
SBS Chr1 31235089 G-A Homo INTERGENIC
SBS Chr1 32658750 G-A Hetero INTRON
SBS Chr2 20436461 T-A Hetero INTERGENIC
SBS Chr2 29117692 T-A Hetero INTERGENIC
SBS Chr3 7585372 G-T Hetero INTERGENIC
SBS Chr4 11543 G-A Hetero INTERGENIC
SBS Chr4 3687594 A-G Hetero INTERGENIC
SBS Chr4 15995442 G-T Hetero INTERGENIC
SBS Chr4 29922722 G-A Homo INTERGENIC
SBS Chr4 33987652 T-C Homo INTRON
SBS Chr4 34535886 G-T Homo INTERGENIC
SBS Chr5 2834183 T-C Homo UTR_5_PRIME
SBS Chr5 11504019 G-A Hetero INTERGENIC
SBS Chr5 20812588 A-T Hetero INTERGENIC
SBS Chr6 1107359 C-T Hetero INTERGENIC
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr7 1112239 G-A Homo INTERGENIC
SBS Chr7 20889693 G-A Hetero INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr9 1480221 A-T Homo INTERGENIC
SBS Chr9 14276163 C-A Homo INTERGENIC
SBS Chr9 14276168 A-C Homo INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr10 7223228 C-T Homo INTERGENIC
SBS Chr10 16169634 G-A Hetero INTERGENIC
SBS Chr11 2850106 C-A Hetero INTERGENIC
SBS Chr11 28727717 A-G Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 964819 964824 5
Deletion Chr12 12427121 12427122 1
Deletion Chr3 17538124 17538125 1
Deletion Chr3 23162073 23162075 2
Deletion Chr8 25883556 25883558 2
Deletion Chr6 26256932 26256936 4
Deletion Chr5 30223346 30223347 1
Deletion Chr3 34649302 34649303 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2645228 2645230 1
Insertion Chr9 15735412 15735415 2 OsKitaake09g111900

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8626774 8628661
Inversion Chr3 8626775 8628804
Inversion Chr2 21418620 21430718
Inversion Chr2 21426835 21430725 OsKitaake02g206900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19982730	T-A	Hetero	INTERGENIC
SBS	Chr1	31235089	G-A	Homo	INTERGENIC
SBS	Chr1	32658750	G-A	Hetero	INTRON
SBS	Chr2	20436461	T-A	Hetero	INTERGENIC
SBS	Chr2	29117692	T-A	Hetero	INTERGENIC
SBS	Chr3	7585372	G-T	Hetero	INTERGENIC
SBS	Chr4	11543	G-A	Hetero	INTERGENIC
SBS	Chr4	3687594	A-G	Hetero	INTERGENIC
SBS	Chr4	15995442	G-T	Hetero	INTERGENIC
SBS	Chr4	29922722	G-A	Homo	INTERGENIC
SBS	Chr4	33987652	T-C	Homo	INTRON
SBS	Chr4	34535886	G-T	Homo	INTERGENIC
SBS	Chr5	2834183	T-C	Homo	UTR_5_PRIME
SBS	Chr5	11504019	G-A	Hetero	INTERGENIC
SBS	Chr5	20812588	A-T	Hetero	INTERGENIC
SBS	Chr6	1107359	C-T	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr7	1112239	G-A	Homo	INTERGENIC
SBS	Chr7	20889693	G-A	Hetero	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr9	1480221	A-T	Homo	INTERGENIC
SBS	Chr9	14276163	C-A	Homo	INTERGENIC
SBS	Chr9	14276168	A-C	Homo	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr10	7223228	C-T	Homo	INTERGENIC
SBS	Chr10	16169634	G-A	Hetero	INTERGENIC
SBS	Chr11	2850106	C-A	Hetero	INTERGENIC
SBS	Chr11	28727717	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	964819	964824	5
Deletion	Chr12	12427121	12427122	1
Deletion	Chr3	17538124	17538125	1
Deletion	Chr3	23162073	23162075	2
Deletion	Chr8	25883556	25883558	2
Deletion	Chr6	26256932	26256936	4
Deletion	Chr5	30223346	30223347	1
Deletion	Chr3	34649302	34649303	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8626774	8628661
Inversion	Chr3	8626775	8628804
Inversion	Chr2	21418620	21430718
Inversion	Chr2	21426835	21430725	OsKitaake02g206900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes