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| Mutant Information |
|---|
| Mutant Name | FN-243 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-243 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 519746 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22809150 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22973397 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23891270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14781150 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31228728 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26676740 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35998096 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 35998097 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 35998099 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 6937670 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17172413 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 18927524 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 24661213 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 28335294 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34601180 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15080775 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 17514167 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23795100 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 16756293 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18838478 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18257297 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 4897700 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10785524 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 25739388 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3072433 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13783997 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4239068 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 4705672 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12019699 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 21203198 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 2756683 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g038800 |
| SBS | Chr11 | 21260853 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25441231 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26269437 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3959968 | 3959979 | 11 | |
| Deletion | Chr7 | 8165312 | 8165403 | 91 | OsKitaake07g089300 |
| Deletion | Chr11 | 8716916 | 8716917 | 1 | |
| Deletion | Chr2 | 9532150 | 9532152 | 2 | |
| Deletion | Chr11 | 11112781 | 11112789 | 8 | |
| Deletion | Chr8 | 12807026 | 12807027 | 1 | |
| Deletion | Chr6 | 14996001 | 15037000 | 40999 | |
| Deletion | Chr3 | 16377426 | 16377432 | 6 | |
| Deletion | Chr6 | 19735131 | 19735499 | 368 | |
| Deletion | Chr8 | 20458330 | 20458332 | 2 | OsKitaake08g151700 |
| Deletion | Chr4 | 20477915 | 20477916 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13129548 | 13129551 | 2 | |
| Insertion | Chr1 | 33507593 | 33507596 | 2 | |
| Insertion | Chr3 | 20050183 | 20050185 | 1 | |
| Insertion | Chr8 | 8960664 | 8960673 | 8 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6044881 | Chr1 | 42352414 | OsKitaake01g466600 |