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| Mutant Information |
|---|
| Mutant Name | FN-245 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-245 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2478111 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 12744244 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 22964758 | G-T | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 29090276 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34634445 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 43728762 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 3330841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3330842 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14443774 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19138515 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 26234037 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 28621576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12868028 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27034319 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 35017112 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 3543749 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22756788 | T-G | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 16389145 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17885997 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 22929459 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6836886 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6944230 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16368747 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5721323 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19549036 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18607077 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 21526628 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 24551739 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6258733 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7569319 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 12308614 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19898666 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 103454 | 104161 | 707 | |
| Deletion | Chr5 | 481402 | 481557 | 155 | |
| Deletion | Chr5 | 1603505 | 1603508 | 3 | |
| Deletion | Chr5 | 3085448 | 3085449 | 1 | |
| Deletion | Chr1 | 4325247 | 4325248 | 1 | OsKitaake01g057600 |
| Deletion | Chr8 | 10576947 | 10576955 | 8 | |
| Deletion | Chr4 | 13591215 | 13591216 | 1 | |
| Deletion | Chr8 | 13924848 | 13924849 | 1 | |
| Deletion | Chr3 | 14861001 | 14893000 | 31999 | 2 |
| Deletion | Chr11 | 17058362 | 17058425 | 63 | OsKitaake11g133400 |
| Deletion | Chr4 | 20872642 | 20872649 | 7 | OsKitaake04g113800 |
| Deletion | Chr8 | 21592312 | 21592314 | 2 | |
| Deletion | Chr3 | 24525259 | 24525261 | 2 | |
| Deletion | Chr8 | 27683822 | 27683823 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 5735714 | 5735716 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 7369050 | 7822660 | |
| Inversion | Chr1 | 7369051 | 7822661 | |
| Inversion | Chr8 | 19298560 | 19301183 | |
| Inversion | Chr8 | 19298597 | 19301195 |