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Mutant Information

Mutant Name	FN-246 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-246 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1661506 A-T Homo INTRON
SBS Chr1 32143389 G-A Hetero INTERGENIC
SBS Chr1 32143390 T-A Hetero INTERGENIC
SBS Chr1 32529686 C-T Hetero INTERGENIC
SBS Chr1 33569009 C-T Hetero INTERGENIC
SBS Chr1 34300816 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g353300
SBS Chr1 35166687 A-G Hetero INTRON
SBS Chr1 35166696 G-A Hetero INTRON
SBS Chr1 42872703 C-T Hetero STOP_GAINED OsKitaake01g472100
SBS Chr2 3781238 T-A Hetero INTRON
SBS Chr2 10522711 T-A Hetero INTERGENIC
SBS Chr2 21168113 T-G Hetero INTRON
SBS Chr2 27779049 A-T Homo INTERGENIC
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr3 5638002 C-T Hetero INTERGENIC
SBS Chr3 25380241 G-C Hetero INTERGENIC
SBS Chr3 26009972 C-A Hetero INTERGENIC
SBS Chr3 27406971 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 28981842 T-A Homo INTERGENIC
SBS Chr5 10809709 C-T Hetero INTERGENIC
SBS Chr5 25746359 C-T Hetero INTERGENIC
SBS Chr5 25746367 A-T Hetero INTERGENIC
SBS Chr5 26480783 A-T Hetero INTERGENIC
SBS Chr5 26608373 G-A Hetero INTERGENIC
SBS Chr7 16359170 A-T Homo INTERGENIC
SBS Chr7 22011380 C-T Homo INTRON
SBS Chr8 4272807 A-T Hetero INTRON
SBS Chr8 4272808 A-T Hetero INTRON
SBS Chr8 6801772 G-A Hetero INTERGENIC
SBS Chr8 12123556 A-T Homo INTERGENIC
SBS Chr8 15576726 C-T Hetero INTERGENIC
SBS Chr8 17015188 C-T Hetero INTERGENIC
SBS Chr8 23529419 A-G Hetero INTERGENIC
SBS Chr8 24948210 C-G Hetero INTERGENIC
SBS Chr9 724305 C-T Hetero INTERGENIC
SBS Chr9 13617496 A-G Hetero INTERGENIC
SBS Chr9 18760574 G-A Hetero INTRON
SBS Chr10 17171684 C-T Hetero INTERGENIC
SBS Chr10 21586976 G-A Homo INTERGENIC
SBS Chr11 22442224 C-T Homo INTERGENIC
SBS Chr11 26433031 A-G Hetero INTERGENIC
SBS Chr12 8523449 C-T Hetero INTERGENIC
SBS Chr12 18233502 T-A Hetero INTERGENIC
SBS Chr12 19507666 G-T Hetero INTERGENIC
SBS Chr12 19523305 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1564610 1564619 9
Deletion Chr11 2399090 2399098 8
Deletion Chr1 3891005 3891007 2
Deletion Chr11 4074814 4074815 1 OsKitaake11g055300
Deletion Chr1 5424339 5424340 1 OsKitaake01g070000
Deletion Chr6 6013281 6013282 1
Deletion Chr4 9480408 9480580 172
Deletion Chr5 11673341 11673345 4
Deletion Chr1 12117818 12117824 6
Deletion Chr12 13137001 13246000 108999 13
Deletion Chr12 13616001 13626000 9999
Deletion Chr6 14273007 14273217 210
Deletion Chr9 15554831 15554928 97
Deletion Chr2 23011427 23011429 2 OsKitaake02g224700
Deletion Chr7 23140006 23140012 6 OsKitaake07g199600
Deletion Chr3 26205001 26277000 71999
Deletion Chr3 35167139 35167144 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 21117919 21117921 1
Insertion Chr1 17221953 17221955 1
Insertion Chr2 13855581 13855584 2
Insertion Chr5 30226856 30226864 7
Insertion Chr7 21815140 21815142 1 OsKitaake07g183400
Insertion Chr10 4427109 4427111 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11415423 12294737
Inversion Chr12 13615706 13741138
Inversion Chr12 13626240 13741144

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10688889 Chr3 11415452 OsKitaake11g105300
Translocation Chr11 10688908 Chr3 11417645 OsKitaake11g105300
Translocation Chr9 16932928 Chr3 28902814
Translocation Chr9 16933915 Chr3 28902804
Translocation Chr9 17699453 Chr5 20227276 OsKitaake09g133900
Translocation Chr9 17728667 Chr5 20227293 OsKitaake09g134200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1661506	A-T	Homo	INTRON
SBS	Chr1	32143389	G-A	Hetero	INTERGENIC
SBS	Chr1	32143390	T-A	Hetero	INTERGENIC
SBS	Chr1	32529686	C-T	Hetero	INTERGENIC
SBS	Chr1	33569009	C-T	Hetero	INTERGENIC
SBS	Chr1	34300816	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g353300
SBS	Chr1	35166687	A-G	Hetero	INTRON
SBS	Chr1	35166696	G-A	Hetero	INTRON
SBS	Chr1	42872703	C-T	Hetero	STOP_GAINED	OsKitaake01g472100
SBS	Chr2	3781238	T-A	Hetero	INTRON
SBS	Chr2	10522711	T-A	Hetero	INTERGENIC
SBS	Chr2	21168113	T-G	Hetero	INTRON
SBS	Chr2	27779049	A-T	Homo	INTERGENIC
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr3	5638002	C-T	Hetero	INTERGENIC
SBS	Chr3	25380241	G-C	Hetero	INTERGENIC
SBS	Chr3	26009972	C-A	Hetero	INTERGENIC
SBS	Chr3	27406971	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	28981842	T-A	Homo	INTERGENIC
SBS	Chr5	10809709	C-T	Hetero	INTERGENIC
SBS	Chr5	25746359	C-T	Hetero	INTERGENIC
SBS	Chr5	25746367	A-T	Hetero	INTERGENIC
SBS	Chr5	26480783	A-T	Hetero	INTERGENIC
SBS	Chr5	26608373	G-A	Hetero	INTERGENIC
SBS	Chr7	16359170	A-T	Homo	INTERGENIC
SBS	Chr7	22011380	C-T	Homo	INTRON
SBS	Chr8	4272807	A-T	Hetero	INTRON
SBS	Chr8	4272808	A-T	Hetero	INTRON
SBS	Chr8	6801772	G-A	Hetero	INTERGENIC
SBS	Chr8	12123556	A-T	Homo	INTERGENIC
SBS	Chr8	15576726	C-T	Hetero	INTERGENIC
SBS	Chr8	17015188	C-T	Hetero	INTERGENIC
SBS	Chr8	23529419	A-G	Hetero	INTERGENIC
SBS	Chr8	24948210	C-G	Hetero	INTERGENIC
SBS	Chr9	724305	C-T	Hetero	INTERGENIC
SBS	Chr9	13617496	A-G	Hetero	INTERGENIC
SBS	Chr9	18760574	G-A	Hetero	INTRON
SBS	Chr10	17171684	C-T	Hetero	INTERGENIC
SBS	Chr10	21586976	G-A	Homo	INTERGENIC
SBS	Chr11	22442224	C-T	Homo	INTERGENIC
SBS	Chr11	26433031	A-G	Hetero	INTERGENIC
SBS	Chr12	8523449	C-T	Hetero	INTERGENIC
SBS	Chr12	18233502	T-A	Hetero	INTERGENIC
SBS	Chr12	19507666	G-T	Hetero	INTERGENIC
SBS	Chr12	19523305	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1564610	1564619	9
Deletion	Chr11	2399090	2399098	8
Deletion	Chr1	3891005	3891007	2
Deletion	Chr11	4074814	4074815	1	OsKitaake11g055300
Deletion	Chr1	5424339	5424340	1	OsKitaake01g070000
Deletion	Chr6	6013281	6013282	1
Deletion	Chr4	9480408	9480580	172
Deletion	Chr5	11673341	11673345	4
Deletion	Chr1	12117818	12117824	6
Deletion	Chr12	13137001	13246000	108999	13
Deletion	Chr12	13616001	13626000	9999
Deletion	Chr6	14273007	14273217	210
Deletion	Chr9	15554831	15554928	97
Deletion	Chr2	23011427	23011429	2	OsKitaake02g224700
Deletion	Chr7	23140006	23140012	6	OsKitaake07g199600
Deletion	Chr3	26205001	26277000	71999
Deletion	Chr3	35167139	35167144	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11415423	12294737
Inversion	Chr12	13615706	13741138
Inversion	Chr12	13626240	13741144

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes