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Mutant Information

Mutant Name	FN-247 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-247 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19591762 C-T Hetero INTERGENIC
SBS Chr1 21336174 T-A Homo INTRON
SBS Chr2 891947 G-T Hetero INTERGENIC
SBS Chr2 10548909 G-T Hetero INTERGENIC
SBS Chr2 32524395 G-A Homo INTERGENIC
SBS Chr3 34216684 A-T Homo INTRON
SBS Chr4 3122610 G-A Homo INTERGENIC
SBS Chr4 28895892 C-A Hetero INTRON
SBS Chr5 6015455 T-A Hetero INTERGENIC
SBS Chr6 7128484 A-G Homo INTERGENIC
SBS Chr6 14669392 G-A Hetero INTERGENIC
SBS Chr6 17607753 G-A Homo INTERGENIC
SBS Chr7 15248946 G-T Hetero UTR_3_PRIME
SBS Chr7 17574256 G-A Hetero INTERGENIC
SBS Chr8 354695 A-T Hetero UTR_3_PRIME
SBS Chr8 354696 G-T Hetero UTR_3_PRIME
SBS Chr8 14285045 G-T Hetero INTERGENIC
SBS Chr9 8032721 A-T Hetero INTERGENIC
SBS Chr9 11734395 T-C Homo INTRON
SBS Chr11 6822513 C-A Hetero INTERGENIC
SBS Chr11 11330244 G-A Hetero INTERGENIC
SBS Chr11 15742091 A-G Hetero INTERGENIC
SBS Chr11 16769995 T-C Hetero INTERGENIC
SBS Chr11 17699502 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g138800
SBS Chr12 6756476 G-A Homo INTRON
SBS Chr12 20176863 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1483299 1483344 45
Deletion Chr11 2466313 2466315 2
Deletion Chr11 2752625 2752839 214
Deletion Chr2 5266001 5331000 64999 13
Deletion Chr9 8031001 8116000 84999 7
Deletion Chr7 8659994 8659996 2
Deletion Chr4 10248875 10248876 1
Deletion Chr10 13984652 13984723 71
Deletion Chr6 15655055 15655056 1 OsKitaake06g152800
Deletion Chr8 16295694 16295696 2
Deletion Chr3 16528056 16528058 2
Deletion Chr6 20204336 20204384 48
Deletion Chr2 23490427 23490429 2
Deletion Chr8 25569202 25569203 1
Deletion Chr4 32605001 32635000 29999 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 12161070 12161073 2
Insertion Chr1 40458622 40458644 21
Insertion Chr2 13854529 13854531 1
Insertion Chr3 19362193 19362195 1
Insertion Chr4 11077459 11077461 1
Insertion Chr7 14345184 14345186 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10456544 10543791
Inversion Chr11 19662711 19663700
Inversion Chr11 19662715 19663707
Inversion Chr1 21952718 22361957 OsKitaake01g211300
Inversion Chr1 21952739 22361969 OsKitaake01g211300

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 9950296 Chr4 35988518 OsKitaake08g091900
Translocation Chr8 10456533 Chr4 35991496 OsKitaake04g309400
Translocation Chr4 32604520 Chr3 29436008 OsKitaake04g261700
Translocation Chr4 32612516 Chr3 29436001 OsKitaake04g261900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19591762	C-T	Hetero	INTERGENIC
SBS	Chr1	21336174	T-A	Homo	INTRON
SBS	Chr2	891947	G-T	Hetero	INTERGENIC
SBS	Chr2	10548909	G-T	Hetero	INTERGENIC
SBS	Chr2	32524395	G-A	Homo	INTERGENIC
SBS	Chr3	34216684	A-T	Homo	INTRON
SBS	Chr4	3122610	G-A	Homo	INTERGENIC
SBS	Chr4	28895892	C-A	Hetero	INTRON
SBS	Chr5	6015455	T-A	Hetero	INTERGENIC
SBS	Chr6	7128484	A-G	Homo	INTERGENIC
SBS	Chr6	14669392	G-A	Hetero	INTERGENIC
SBS	Chr6	17607753	G-A	Homo	INTERGENIC
SBS	Chr7	15248946	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	17574256	G-A	Hetero	INTERGENIC
SBS	Chr8	354695	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	354696	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	14285045	G-T	Hetero	INTERGENIC
SBS	Chr9	8032721	A-T	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Homo	INTRON
SBS	Chr11	6822513	C-A	Hetero	INTERGENIC
SBS	Chr11	11330244	G-A	Hetero	INTERGENIC
SBS	Chr11	15742091	A-G	Hetero	INTERGENIC
SBS	Chr11	16769995	T-C	Hetero	INTERGENIC
SBS	Chr11	17699502	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g138800
SBS	Chr12	6756476	G-A	Homo	INTRON
SBS	Chr12	20176863	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1483299	1483344	45
Deletion	Chr11	2466313	2466315	2
Deletion	Chr11	2752625	2752839	214
Deletion	Chr2	5266001	5331000	64999	13
Deletion	Chr9	8031001	8116000	84999	7
Deletion	Chr7	8659994	8659996	2
Deletion	Chr4	10248875	10248876	1
Deletion	Chr10	13984652	13984723	71
Deletion	Chr6	15655055	15655056	1	OsKitaake06g152800
Deletion	Chr8	16295694	16295696	2
Deletion	Chr3	16528056	16528058	2
Deletion	Chr6	20204336	20204384	48
Deletion	Chr2	23490427	23490429	2
Deletion	Chr8	25569202	25569203	1
Deletion	Chr4	32605001	32635000	29999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10456544	10543791
Inversion	Chr11	19662711	19663700
Inversion	Chr11	19662715	19663707
Inversion	Chr1	21952718	22361957	OsKitaake01g211300
Inversion	Chr1	21952739	22361969	OsKitaake01g211300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes