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| Mutant Information |
|---|
| Mutant Name | FN-248 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-248 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12695472 | C-T | Homo | INTRON | |
| SBS | Chr1 | 22255956 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 25605022 | G-C | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 25790987 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g250732 |
| SBS | Chr1 | 30876561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8616239 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 7549419 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9151696 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16028093 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24807532 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27420197 | T-G | Homo | INTRON | |
| SBS | Chr3 | 31241632 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9608670 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 15170594 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 16924899 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 4190880 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22450706 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 7184541 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 10523332 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 10649231 | G-A | Homo | INTRON | |
| SBS | Chr7 | 14954200 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16833545 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18621618 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26791686 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 29259385 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 12605414 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11366548 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 11444112 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g071000 |
| SBS | Chr9 | 15587372 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18567975 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5261154 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10131854 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15189431 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22076342 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13121609 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21263706 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24667235 | T-C | Homo | INTRON | |
| SBS | Chr12 | 25653022 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 26064688 | G-A | Homo | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 461476 | 461495 | 19 | |
| Deletion | Chr5 | 2878827 | 2878828 | 1 | |
| Deletion | Chr10 | 3618492 | 3618493 | 1 | |
| Deletion | Chr5 | 5914748 | 5914750 | 2 | |
| Deletion | Chr3 | 6280035 | 6280155 | 120 | |
| Deletion | Chr2 | 8530704 | 8530709 | 5 | |
| Deletion | Chr8 | 10144118 | 10144126 | 8 | |
| Deletion | Chr9 | 11510001 | 11599000 | 88999 | 16 |
| Deletion | Chr9 | 11613001 | 12328000 | 714999 | 71 |
| Deletion | Chr8 | 15185260 | 15185272 | 12 | |
| Deletion | Chr9 | 15656901 | 15656902 | 1 | |
| Deletion | Chr5 | 16743591 | 16743682 | 91 | |
| Deletion | Chr8 | 21650753 | 21650754 | 1 | |
| Deletion | Chr3 | 21782731 | 21782733 | 2 | OsKitaake03g239300 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13135367 | 13135372 | 4 |