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Mutant Information

Mutant Name	FN-249 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-249 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 2146909 A-T Hetero INTRON
SBS Chr2 21015171 G-A Hetero INTERGENIC
SBS Chr2 25454651 C-T Hetero UTR_3_PRIME
SBS Chr2 25454652 A-T Hetero UTR_3_PRIME
SBS Chr2 26229666 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g260400
SBS Chr2 28927796 A-T Hetero INTERGENIC
SBS Chr2 29062066 C-G Hetero INTERGENIC
SBS Chr2 29062073 T-G Hetero INTERGENIC
SBS Chr2 30090276 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g305600
SBS Chr2 36544987 C-A Hetero UTR_3_PRIME
SBS Chr2 36544988 C-A Hetero UTR_3_PRIME
SBS Chr3 17687579 C-A Homo INTERGENIC
SBS Chr3 24822278 T-C Homo INTERGENIC
SBS Chr3 32701032 C-A Hetero INTERGENIC
SBS Chr4 5994158 G-A Homo INTERGENIC
SBS Chr4 9541366 C-A Hetero INTERGENIC
SBS Chr4 12763806 G-T Homo INTRON
SBS Chr4 12874585 C-T Homo INTRON
SBS Chr4 17713056 T-C Homo UTR_5_PRIME
SBS Chr4 30284724 C-T Hetero INTERGENIC
SBS Chr6 3729745 G-C Homo INTRON
SBS Chr7 12405243 G-T Hetero INTERGENIC
SBS Chr7 19469198 G-A Hetero INTERGENIC
SBS Chr8 433356 T-C Hetero INTERGENIC
SBS Chr8 12974236 C-T Homo INTERGENIC
SBS Chr9 5528890 C-A Hetero INTERGENIC
SBS Chr10 2101077 G-A Homo INTERGENIC
SBS Chr10 21337824 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g168200
SBS Chr10 21337825 C-A Homo NON_SYNONYMOUS_CODING OsKitaake10g168200
SBS Chr11 28290552 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4451871 4451964 93
Deletion Chr10 5483343 5483344 1
Deletion Chr9 8945221 8945262 41
Deletion Chr5 9611001 9688000 76999 2
Deletion Chr3 10534820 10534821 1
Deletion Chr7 13723001 13729000 5999
Deletion Chr1 15838922 15838926 4
Deletion Chr10 20452763 20452764 1 OsKitaake10g156500
Deletion Chr11 22042371 22042375 4
Deletion Chr1 23272083 23272085 2
Deletion Chr3 23350791 23350793 2
Deletion Chr1 30479001 31218000 738999 110

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 7007137 7007141 3
Insertion Chr5 12402355 12402357 1
Insertion Chr5 30215938 30215946 7

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 24369110 24610933

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2146909	A-T	Hetero	INTRON
SBS	Chr2	21015171	G-A	Hetero	INTERGENIC
SBS	Chr2	25454651	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	25454652	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	26229666	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g260400
SBS	Chr2	28927796	A-T	Hetero	INTERGENIC
SBS	Chr2	29062066	C-G	Hetero	INTERGENIC
SBS	Chr2	29062073	T-G	Hetero	INTERGENIC
SBS	Chr2	30090276	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g305600
SBS	Chr2	36544987	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	36544988	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	17687579	C-A	Homo	INTERGENIC
SBS	Chr3	24822278	T-C	Homo	INTERGENIC
SBS	Chr3	32701032	C-A	Hetero	INTERGENIC
SBS	Chr4	5994158	G-A	Homo	INTERGENIC
SBS	Chr4	9541366	C-A	Hetero	INTERGENIC
SBS	Chr4	12763806	G-T	Homo	INTRON
SBS	Chr4	12874585	C-T	Homo	INTRON
SBS	Chr4	17713056	T-C	Homo	UTR_5_PRIME
SBS	Chr4	30284724	C-T	Hetero	INTERGENIC
SBS	Chr6	3729745	G-C	Homo	INTRON
SBS	Chr7	12405243	G-T	Hetero	INTERGENIC
SBS	Chr7	19469198	G-A	Hetero	INTERGENIC
SBS	Chr8	433356	T-C	Hetero	INTERGENIC
SBS	Chr8	12974236	C-T	Homo	INTERGENIC
SBS	Chr9	5528890	C-A	Hetero	INTERGENIC
SBS	Chr10	2101077	G-A	Homo	INTERGENIC
SBS	Chr10	21337824	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g168200
SBS	Chr10	21337825	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g168200
SBS	Chr11	28290552	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4451871	4451964	93
Deletion	Chr10	5483343	5483344	1
Deletion	Chr9	8945221	8945262	41
Deletion	Chr5	9611001	9688000	76999	2
Deletion	Chr3	10534820	10534821	1
Deletion	Chr7	13723001	13729000	5999
Deletion	Chr1	15838922	15838926	4
Deletion	Chr10	20452763	20452764	1	OsKitaake10g156500
Deletion	Chr11	22042371	22042375	4
Deletion	Chr1	23272083	23272085	2
Deletion	Chr3	23350791	23350793	2
Deletion	Chr1	30479001	31218000	738999	110

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	24369110	24610933

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes