Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-25 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-25 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29369413 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4503665 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17003343 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34885172 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22029045 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 589452 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11479140 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15765847 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17430939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32602748 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 24916444 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9820479 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10280387 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 10280388 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14396634 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15146297 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15893659 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18233771 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 20203970 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 21154920 | T-C | Homo | INTRON | |
| SBS | Chr9 | 7196752 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13434233 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15426737 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12519664 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5734531 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7137002 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3318720 | 3318722 | 2 | |
| Deletion | Chr7 | 4066338 | 4066342 | 4 | |
| Deletion | Chr8 | 8794610 | 8794618 | 8 | |
| Deletion | Chr6 | 8987833 | 8987834 | 1 | |
| Deletion | Chr11 | 9057182 | 9057192 | 10 | |
| Deletion | Chr11 | 16236153 | 16236161 | 8 | |
| Deletion | Chr11 | 18297278 | 18297279 | 1 | |
| Deletion | Chr4 | 21775711 | 21775713 | 2 | |
| Deletion | Chr4 | 24435537 | 24435548 | 11 | |
| Deletion | Chr7 | 25386506 | 25386507 | 1 | |
| Deletion | Chr3 | 25778529 | 25778532 | 3 | |
| Deletion | Chr11 | 26704347 | 26704356 | 9 | |
| Deletion | Chr11 | 28363322 | 28363331 | 9 | |
| Deletion | Chr2 | 33443191 | 33443194 | 3 | OsKitaake02g344900 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 33229327 | 33229329 | 1 | |
| Insertion | Chr5 | 2837653 | 2837656 | 2 | |
| Insertion | Chr6 | 2978849 | 2978851 | 1 | |
| Insertion | Chr7 | 18910817 | 18910820 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 6706145 | 6732728 | |
| Inversion | Chr11 | 8837599 | 8921778 | |
| Inversion | Chr11 | 8837601 | 8921785 |