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| Mutant Information |
|---|
| Mutant Name | FN-250 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-250 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 4288172 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 24025229 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 24557082 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27127945 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 28266699 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27932958 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32347045 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36008108 | C-G | Homo | INTRON | |
| SBS | Chr5 | 11369366 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 4644625 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 8401242 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 6643212 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 26880659 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 11598573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 330999 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15285705 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 19504766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2851086 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9793899 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14617087 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 15076603 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15751691 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 7085633 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4882178 | A-G | Homo | INTRON | |
| SBS | Chr12 | 10001584 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 10825385 | C-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1440863 | 1440865 | 2 | |
| Deletion | Chr12 | 4549771 | 4549772 | 1 | OsKitaake12g060500 |
| Deletion | Chr6 | 6639853 | 6639859 | 6 | |
| Deletion | Chr6 | 9711949 | 9711953 | 4 | |
| Deletion | Chr6 | 10242391 | 10242393 | 2 | |
| Deletion | Chr7 | 11852564 | 11852568 | 4 | |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr3 | 16532081 | 16532087 | 6 | |
| Deletion | Chr11 | 25501918 | 25501929 | 11 | |
| Deletion | Chr2 | 28278792 | 28278794 | 2 | |
| Deletion | Chr11 | 28974532 | 28974534 | 2 | OsKitaake11g237100 |
| Deletion | Chr1 | 40392090 | 40392104 | 14 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 19374262 | 19374266 | 3 | |
| Insertion | Chr3 | 16744382 | 16744384 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 11781907 | 12110647 | OsKitaake08g105600 |
| Inversion | Chr8 | 11781915 | 12110658 | OsKitaake08g105600 |
| Inversion | Chr10 | 18906410 | 18927083 | |
| Inversion | Chr10 | 18906462 | 18927086 | |
| Inversion | Chr2 | 35019605 | 35194739 | OsKitaake02g365900 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 32275395 | Chr2 | 35019596 | 2 |