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Mutant Information

Mutant Name	FN-251 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-251 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7104361 T-A Hetero INTERGENIC
SBS Chr1 17104754 G-A Hetero INTERGENIC
SBS Chr1 20550043 A-T Hetero INTERGENIC
SBS Chr1 22861029 C-G Hetero INTERGENIC
SBS Chr1 43360347 T-C Hetero INTERGENIC
SBS Chr2 18587219 A-T Hetero INTERGENIC
SBS Chr2 18669941 G-A Homo INTERGENIC
SBS Chr3 31611102 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g333100
SBS Chr4 6925446 C-T Hetero INTERGENIC
SBS Chr4 7445053 T-C Hetero INTERGENIC
SBS Chr4 28342882 A-T Hetero INTERGENIC
SBS Chr4 33701060 G-T Hetero UTR_3_PRIME
SBS Chr5 9471468 G-T Homo INTERGENIC
SBS Chr5 23233379 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 14431142 G-A Homo INTERGENIC
SBS Chr6 14431143 G-A Homo INTERGENIC
SBS Chr6 19368826 A-T Homo UTR_3_PRIME
SBS Chr6 19368827 A-T Homo UTR_3_PRIME
SBS Chr7 18233503 G-A Homo INTERGENIC
SBS Chr9 8323735 C-T Homo INTERGENIC
SBS Chr10 2650309 T-A Hetero INTERGENIC
SBS Chr10 3929074 A-G Hetero INTERGENIC
SBS Chr10 4550250 A-G Hetero INTERGENIC
SBS Chr10 7849925 C-T Hetero INTERGENIC
SBS Chr11 13503525 T-C Hetero INTERGENIC
SBS Chr11 16130703 A-G Hetero INTERGENIC
SBS Chr11 24364692 T-A Homo INTERGENIC
SBS Chr12 19324818 A-G Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1553196 1553263 67
Deletion Chr3 1885974 1885980 6
Deletion Chr2 2141165 2141167 2 OsKitaake02g032300
Deletion Chr6 2321504 2321507 3
Deletion Chr4 2563001 2691000 127999 OsKitaake04g015800
Deletion Chr3 2884554 2884565 11
Deletion Chr1 2916924 2916925 1
Deletion Chr8 6019101 6019102 1 OsKitaake08g064900
Deletion Chr9 7221001 7328000 106999 OsKitaake09g041900
Deletion Chr10 9530001 9621000 90999 4
Deletion Chr2 11799001 11894000 94999 9
Deletion Chr2 11898001 11973000 74999 3
Deletion Chr6 15750974 15750975 1
Deletion Chr7 20679602 20679604 2
Deletion Chr12 22641731 22641733 2
Deletion Chr3 24258351 24258352 1
Deletion Chr12 24766001 24846000 79999 8
Deletion Chr2 32483571 32483580 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 3580640 3580644 3
Insertion Chr8 4073615 4073618 2
Insertion Chr3 20036001 20036003 1
Insertion Chr6 6994 6996 1
Insertion Chr11 22957826 22957828 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 9781642 10470713
Inversion Chr11 20071576 20073442
Inversion Chr11 20071580 20073440
Inversion Chr6 24119588 24124216 OsKitaake06g213800
Inversion Chr6 24124303 24208698 OsKitaake06g213800
Inversion Chr1 37378378 38293606

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2470618 Chr4 5518674
Translocation Chr8 28476273 Chr4 36828342 2
Translocation Chr8 28476276 Chr4 36830384 OsKitaake08g241500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7104361	T-A	Hetero	INTERGENIC
SBS	Chr1	17104754	G-A	Hetero	INTERGENIC
SBS	Chr1	20550043	A-T	Hetero	INTERGENIC
SBS	Chr1	22861029	C-G	Hetero	INTERGENIC
SBS	Chr1	43360347	T-C	Hetero	INTERGENIC
SBS	Chr2	18587219	A-T	Hetero	INTERGENIC
SBS	Chr2	18669941	G-A	Homo	INTERGENIC
SBS	Chr3	31611102	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g333100
SBS	Chr4	6925446	C-T	Hetero	INTERGENIC
SBS	Chr4	7445053	T-C	Hetero	INTERGENIC
SBS	Chr4	28342882	A-T	Hetero	INTERGENIC
SBS	Chr4	33701060	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	9471468	G-T	Homo	INTERGENIC
SBS	Chr5	23233379	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14431142	G-A	Homo	INTERGENIC
SBS	Chr6	14431143	G-A	Homo	INTERGENIC
SBS	Chr6	19368826	A-T	Homo	UTR_3_PRIME
SBS	Chr6	19368827	A-T	Homo	UTR_3_PRIME
SBS	Chr7	18233503	G-A	Homo	INTERGENIC
SBS	Chr9	8323735	C-T	Homo	INTERGENIC
SBS	Chr10	2650309	T-A	Hetero	INTERGENIC
SBS	Chr10	3929074	A-G	Hetero	INTERGENIC
SBS	Chr10	4550250	A-G	Hetero	INTERGENIC
SBS	Chr10	7849925	C-T	Hetero	INTERGENIC
SBS	Chr11	13503525	T-C	Hetero	INTERGENIC
SBS	Chr11	16130703	A-G	Hetero	INTERGENIC
SBS	Chr11	24364692	T-A	Homo	INTERGENIC
SBS	Chr12	19324818	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1553196	1553263	67
Deletion	Chr3	1885974	1885980	6
Deletion	Chr2	2141165	2141167	2	OsKitaake02g032300
Deletion	Chr6	2321504	2321507	3
Deletion	Chr4	2563001	2691000	127999	OsKitaake04g015800
Deletion	Chr3	2884554	2884565	11
Deletion	Chr1	2916924	2916925	1
Deletion	Chr8	6019101	6019102	1	OsKitaake08g064900
Deletion	Chr9	7221001	7328000	106999	OsKitaake09g041900
Deletion	Chr10	9530001	9621000	90999	4
Deletion	Chr2	11799001	11894000	94999	9
Deletion	Chr2	11898001	11973000	74999	3
Deletion	Chr6	15750974	15750975	1
Deletion	Chr7	20679602	20679604	2
Deletion	Chr12	22641731	22641733	2
Deletion	Chr3	24258351	24258352	1
Deletion	Chr12	24766001	24846000	79999	8
Deletion	Chr2	32483571	32483580	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9781642	10470713
Inversion	Chr11	20071576	20073442
Inversion	Chr11	20071580	20073440
Inversion	Chr6	24119588	24124216	OsKitaake06g213800
Inversion	Chr6	24124303	24208698	OsKitaake06g213800
Inversion	Chr1	37378378	38293606

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes