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| Mutant Information |
|---|
| Mutant Name | FN-252 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-252 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1745184 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 3766066 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 3766067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15688598 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21593123 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27358221 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 42040054 | T-C | Homo | SPLICE_SITE_DONOR | OsKitaake01g461400 |
| SBS | Chr3 | 19442556 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 24364914 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29282496 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 36965177 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 18658460 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5194724 | A-T | Homo | INTRON | |
| SBS | Chr6 | 25392114 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 29955326 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29955328 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2576968 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4500856 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11541258 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13322282 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 14835977 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 1607206 | T-G | Hetero | INTRON | |
| SBS | Chr9 | 11596255 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 15027962 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 21567277 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 10330673 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15295156 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18716061 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18716065 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18716066 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3795674 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 6783385 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 11101893 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12739422 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3524567 | 3524572 | 5 | |
| Deletion | Chr7 | 4742180 | 4742305 | 125 | |
| Deletion | Chr3 | 7566407 | 7566409 | 2 | |
| Deletion | Chr8 | 14074182 | 14074185 | 3 | |
| Deletion | Chr4 | 17595665 | 17595666 | 1 | |
| Deletion | Chr1 | 22725741 | 22725742 | 1 | |
| Deletion | Chr12 | 23900001 | 23915000 | 14999 | 2 |
| Deletion | Chr3 | 25941480 | 25941481 | 1 | |
| Deletion | Chr1 | 41659187 | 41659188 | 1 | OsKitaake01g455300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22492942 | 22492944 | 1 | |
| Insertion | Chr7 | 11037064 | 11037067 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 28323836 | 28504010 | OsKitaake04g212700 |
| Inversion | Chr4 | 28326489 | 28504568 | 2 |
| Inversion | Chr3 | 30696590 | 30992719 | OsKitaake03g322700 |
| Inversion | Chr3 | 30696618 | 30992746 | OsKitaake03g322700 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 19913919 | Chr4 | 32674075 | OsKitaake09g165800 |
| Translocation | Chr9 | 19913921 | Chr4 | 32672185 | OsKitaake09g165800 |
| Translocation | Chr4 | 28323848 | Chr2 | 36281455 | OsKitaake02g383800 |
| Translocation | Chr4 | 28326486 | Chr2 | 36281470 | 2 |