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| Mutant Information |
|---|
| Mutant Name | FN-255 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-255 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9511672 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 10231770 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26578435 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g265700 |
| SBS | Chr2 | 27309845 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 27791979 | C-T | Homo | INTRON | |
| SBS | Chr2 | 36601994 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 9453334 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 9964499 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17686540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34390841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24460845 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 4404804 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 16429208 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23292681 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g179600 |
| SBS | Chr9 | 8030597 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 9512960 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1063689 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24768248 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 14641488 | G-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 232927 | 232930 | 3 | OsKitaake06g001400 |
| Deletion | Chr6 | 1061568 | 1061570 | 2 | |
| Deletion | Chr2 | 6333028 | 6333030 | 2 | |
| Deletion | Chr4 | 7040885 | 7040886 | 1 | |
| Deletion | Chr10 | 9880646 | 9880648 | 2 | OsKitaake10g057700 |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr12 | 13851664 | 13851666 | 2 | |
| Deletion | Chr6 | 16786828 | 16786829 | 1 | OsKitaake06g158400 |
| Deletion | Chr7 | 16843498 | 16843499 | 1 | |
| Deletion | Chr12 | 20756315 | 20756316 | 1 | OsKitaake12g162200 |
| Deletion | Chr2 | 27834556 | 27834576 | 20 | |
| Deletion | Chr3 | 28205594 | 28205595 | 1 | OsKitaake03g291500 |
| Deletion | Chr2 | 29831351 | 29831352 | 1 | |
| Deletion | Chr6 | 30499639 | 30499642 | 3 | |
| Deletion | Chr4 | 32483395 | 32483397 | 2 | |
| Deletion | Chr2 | 35332312 | 35332322 | 10 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2992859 | 2992862 | 2 | |
| Insertion | Chr6 | 4888 | 4891 | 2 | |
| Insertion | Chr12 | 16857059 | 16857061 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 13552730 | 13690237 | |
| Inversion | Chr10 | 13552733 | 13690243 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 693457 | Chr1 | 1581319 | OsKitaake06g006800 |
| Translocation | Chr6 | 693501 | Chr1 | 1582171 | OsKitaake06g006800 |
| Translocation | Chr11 | 28954786 | Chr6 | 13468640 |