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Mutant Information

Mutant Name	FN-256 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-256 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29722501 A-T Homo INTERGENIC
SBS Chr2 15252343 C-A Hetero INTERGENIC
SBS Chr2 17793894 C-T Hetero INTERGENIC
SBS Chr2 18336390 C-T Hetero INTERGENIC
SBS Chr2 18598900 G-A Hetero INTERGENIC
SBS Chr2 31002507 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 6041369 A-G Hetero INTRON
SBS Chr3 9567635 T-G Homo UTR_3_PRIME
SBS Chr3 15590183 A-T Homo INTERGENIC
SBS Chr3 18202003 C-T Hetero INTERGENIC
SBS Chr4 2021191 C-T Hetero INTERGENIC
SBS Chr4 7498605 G-T Hetero INTERGENIC
SBS Chr4 17692918 C-T Hetero INTERGENIC
SBS Chr4 18501846 C-T Hetero INTERGENIC
SBS Chr4 21958165 G-A Hetero INTERGENIC
SBS Chr4 33772451 A-G Hetero INTERGENIC
SBS Chr4 35275013 A-C Hetero UTR_5_PRIME
SBS Chr5 3248877 A-C Homo SYNONYMOUS_CODING
SBS Chr5 14267355 T-G Homo INTERGENIC
SBS Chr6 5672699 T-C Hetero INTERGENIC
SBS Chr8 11075206 A-T Hetero INTERGENIC
SBS Chr8 22231416 C-T Hetero INTERGENIC
SBS Chr9 10344437 C-T Hetero INTERGENIC
SBS Chr9 10697534 T-C Hetero INTERGENIC
SBS Chr9 18609414 A-T Homo INTERGENIC
SBS Chr10 1764423 C-T Hetero INTRON
SBS Chr10 9831758 A-T Hetero INTERGENIC
SBS Chr11 14171275 G-A Hetero INTERGENIC
SBS Chr11 15005748 G-A Hetero INTERGENIC
SBS Chr12 2712856 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g040100
SBS Chr12 21851371 T-C Hetero INTERGENIC
SBS Chr12 26120652 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2896610 2896612 2
Deletion Chr12 6311507 6311509 2
Deletion Chr12 11715032 11715517 485
Deletion Chr5 13937186 13937187 1
Deletion Chr8 14988099 14988100 1
Deletion Chr5 15132343 15132346 3
Deletion Chr8 19704738 19704740 2
Deletion Chr1 25738414 25738415 1
Deletion Chr3 28552283 28552285 2
Deletion Chr1 33103068 33103076 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 6313086 6313089 2
Insertion Chr4 18345247 18345250 2
Insertion Chr6 2182194 2182196 1 OsKitaake06g027900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 26129539 Chr3 34323747 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29722501	A-T	Homo	INTERGENIC
SBS	Chr2	15252343	C-A	Hetero	INTERGENIC
SBS	Chr2	17793894	C-T	Hetero	INTERGENIC
SBS	Chr2	18336390	C-T	Hetero	INTERGENIC
SBS	Chr2	18598900	G-A	Hetero	INTERGENIC
SBS	Chr2	31002507	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	6041369	A-G	Hetero	INTRON
SBS	Chr3	9567635	T-G	Homo	UTR_3_PRIME
SBS	Chr3	15590183	A-T	Homo	INTERGENIC
SBS	Chr3	18202003	C-T	Hetero	INTERGENIC
SBS	Chr4	2021191	C-T	Hetero	INTERGENIC
SBS	Chr4	7498605	G-T	Hetero	INTERGENIC
SBS	Chr4	17692918	C-T	Hetero	INTERGENIC
SBS	Chr4	18501846	C-T	Hetero	INTERGENIC
SBS	Chr4	21958165	G-A	Hetero	INTERGENIC
SBS	Chr4	33772451	A-G	Hetero	INTERGENIC
SBS	Chr4	35275013	A-C	Hetero	UTR_5_PRIME
SBS	Chr5	3248877	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	14267355	T-G	Homo	INTERGENIC
SBS	Chr6	5672699	T-C	Hetero	INTERGENIC
SBS	Chr8	11075206	A-T	Hetero	INTERGENIC
SBS	Chr8	22231416	C-T	Hetero	INTERGENIC
SBS	Chr9	10344437	C-T	Hetero	INTERGENIC
SBS	Chr9	10697534	T-C	Hetero	INTERGENIC
SBS	Chr9	18609414	A-T	Homo	INTERGENIC
SBS	Chr10	1764423	C-T	Hetero	INTRON
SBS	Chr10	9831758	A-T	Hetero	INTERGENIC
SBS	Chr11	14171275	G-A	Hetero	INTERGENIC
SBS	Chr11	15005748	G-A	Hetero	INTERGENIC
SBS	Chr12	2712856	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g040100
SBS	Chr12	21851371	T-C	Hetero	INTERGENIC
SBS	Chr12	26120652	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2896610	2896612	2
Deletion	Chr12	6311507	6311509	2
Deletion	Chr12	11715032	11715517	485
Deletion	Chr5	13937186	13937187	1
Deletion	Chr8	14988099	14988100	1
Deletion	Chr5	15132343	15132346	3
Deletion	Chr8	19704738	19704740	2
Deletion	Chr1	25738414	25738415	1
Deletion	Chr3	28552283	28552285	2
Deletion	Chr1	33103068	33103076	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	26129539	Chr3	34323747	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes