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| Mutant Information |
|---|
| Mutant Name | FN-258 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-258 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1425619 | G-T | Hetero | START_GAINED | |
| SBS | Chr1 | 32789029 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37813633 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 15730478 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 33774067 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 26019061 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1866569 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 2370881 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2997759 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 36391643 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3145823 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10934093 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 25324721 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1258769 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8001224 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13932056 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18000871 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18000874 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20324285 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 728974 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14348273 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 7869770 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 8170192 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14124234 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18261085 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18325262 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g142500 |
| SBS | Chr12 | 20487788 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 212026 | 212031 | 5 | |
| Deletion | Chr12 | 1678719 | 1678720 | 1 | |
| Deletion | Chr8 | 1750552 | 1750646 | 94 | |
| Deletion | Chr3 | 8266058 | 8266059 | 1 | OsKitaake03g114100 |
| Deletion | Chr1 | 12940880 | 12940882 | 2 | |
| Deletion | Chr6 | 15003816 | 15003817 | 1 | |
| Deletion | Chr2 | 22199694 | 22199705 | 11 | |
| Deletion | Chr7 | 24106081 | 24106087 | 6 | OsKitaake07g213700 |
| Deletion | Chr3 | 25935725 | 25935871 | 146 | |
| Deletion | Chr5 | 28747001 | 28769000 | 21999 | 5 |
| Deletion | Chr4 | 29014692 | 29014693 | 1 | OsKitaake04g218800 |
| Deletion | Chr7 | 29366866 | 29366867 | 1 | OsKitaake07g282300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20194813 | 20194816 | 2 | |
| Insertion | Chr10 | 20017378 | 20017380 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 16466759 | 16471972 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 16466738 | Chr1 | 24813619 | OsKitaake01g239700 |
| Translocation | Chr11 | 16471968 | Chr1 | 24812132 | OsKitaake01g239700 |