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Mutant Information

Mutant Name	FN-259 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-259 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6474406 A-T Hetero INTERGENIC
SBS Chr1 7422579 T-A Hetero INTERGENIC
SBS Chr1 9823178 A-G Hetero INTERGENIC
SBS Chr1 13898323 T-G Hetero INTERGENIC
SBS Chr1 39819762 T-C Hetero INTERGENIC
SBS Chr2 2538360 G-A Homo INTERGENIC
SBS Chr2 21418482 A-T Homo INTERGENIC
SBS Chr2 31631408 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g321880
SBS Chr4 31037379 C-T Hetero INTERGENIC
SBS Chr5 7224766 T-C Hetero INTERGENIC
SBS Chr5 18390138 C-G Hetero INTERGENIC
SBS Chr6 6534950 G-A Hetero INTERGENIC
SBS Chr6 15295640 G-A Hetero INTERGENIC
SBS Chr6 15295641 T-A Hetero INTERGENIC
SBS Chr6 28772646 A-G Homo INTRON
SBS Chr7 23572659 G-A Hetero INTERGENIC
SBS Chr8 5865517 A-G Hetero INTERGENIC
SBS Chr8 6557318 T-A Hetero INTERGENIC
SBS Chr8 8536152 A-C Homo INTERGENIC
SBS Chr8 18745117 T-C Homo INTERGENIC
SBS Chr9 14409127 A-T Hetero INTERGENIC
SBS Chr10 17055261 G-A Hetero INTERGENIC
SBS Chr11 3617813 T-A Hetero INTRON
SBS Chr11 11012676 G-T Homo INTERGENIC
SBS Chr11 17070082 G-C Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 6406813 6406814 1
Deletion Chr4 11558829 11558841 12
Deletion Chr1 17283622 17284286 664
Deletion Chr1 20399653 20399655 2
Deletion Chr8 20549870 20549872 2
Deletion Chr7 23057198 23057200 2
Deletion Chr11 24846001 24853000 6999 OsKitaake11g202100
Deletion Chr8 24941401 24941403 2
Deletion Chr2 25598576 25598578 2
Deletion Chr5 25696759 25696766 7
Deletion Chr1 32210116 32210122 6
Deletion Chr1 36876001 36894000 17999 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 13262406 13262410 3
Insertion Chr5 17332337 17332340 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14375504 14502315
Inversion Chr4 14444261 14502272

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6474406	A-T	Hetero	INTERGENIC
SBS	Chr1	7422579	T-A	Hetero	INTERGENIC
SBS	Chr1	9823178	A-G	Hetero	INTERGENIC
SBS	Chr1	13898323	T-G	Hetero	INTERGENIC
SBS	Chr1	39819762	T-C	Hetero	INTERGENIC
SBS	Chr2	2538360	G-A	Homo	INTERGENIC
SBS	Chr2	21418482	A-T	Homo	INTERGENIC
SBS	Chr2	31631408	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g321880
SBS	Chr4	31037379	C-T	Hetero	INTERGENIC
SBS	Chr5	7224766	T-C	Hetero	INTERGENIC
SBS	Chr5	18390138	C-G	Hetero	INTERGENIC
SBS	Chr6	6534950	G-A	Hetero	INTERGENIC
SBS	Chr6	15295640	G-A	Hetero	INTERGENIC
SBS	Chr6	15295641	T-A	Hetero	INTERGENIC
SBS	Chr6	28772646	A-G	Homo	INTRON
SBS	Chr7	23572659	G-A	Hetero	INTERGENIC
SBS	Chr8	5865517	A-G	Hetero	INTERGENIC
SBS	Chr8	6557318	T-A	Hetero	INTERGENIC
SBS	Chr8	8536152	A-C	Homo	INTERGENIC
SBS	Chr8	18745117	T-C	Homo	INTERGENIC
SBS	Chr9	14409127	A-T	Hetero	INTERGENIC
SBS	Chr10	17055261	G-A	Hetero	INTERGENIC
SBS	Chr11	3617813	T-A	Hetero	INTRON
SBS	Chr11	11012676	G-T	Homo	INTERGENIC
SBS	Chr11	17070082	G-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	6406813	6406814	1
Deletion	Chr4	11558829	11558841	12
Deletion	Chr1	17283622	17284286	664
Deletion	Chr1	20399653	20399655	2
Deletion	Chr8	20549870	20549872	2
Deletion	Chr7	23057198	23057200	2
Deletion	Chr11	24846001	24853000	6999	OsKitaake11g202100
Deletion	Chr8	24941401	24941403	2
Deletion	Chr2	25598576	25598578	2
Deletion	Chr5	25696759	25696766	7
Deletion	Chr1	32210116	32210122	6
Deletion	Chr1	36876001	36894000	17999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14375504	14502315
Inversion	Chr4	14444261	14502272

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes