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Mutant Information |
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Mutant Name | FN-26 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-26 Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 5358579 | G-A | Hetero | INTERGENIC | |
SBS | Chr1 | 20139793 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 43419956 | C-T | Hetero | INTRON | |
SBS | Chr2 | 34749486 | G-C | Hetero | INTERGENIC | |
SBS | Chr3 | 3977418 | T-C | Hetero | SYNONYMOUS_CODING | |
SBS | Chr3 | 4430520 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 6450745 | A-T | Hetero | INTRON | |
SBS | Chr3 | 19708138 | A-G | Hetero | INTERGENIC | |
SBS | Chr3 | 23511412 | C-A | Homo | INTERGENIC | |
SBS | Chr4 | 33419081 | T-A | Hetero | INTERGENIC | |
SBS | Chr5 | 19436005 | A-T | Hetero | INTERGENIC | |
SBS | Chr6 | 16987020 | A-T | Hetero | INTERGENIC | |
SBS | Chr6 | 28904439 | C-T | Homo | INTERGENIC | |
SBS | Chr8 | 730319 | A-G | Hetero | INTERGENIC | |
SBS | Chr8 | 3835949 | G-A | Homo | INTERGENIC | |
SBS | Chr9 | 5934305 | G-T | Homo | INTERGENIC | |
SBS | Chr9 | 10671647 | G-A | Homo | INTERGENIC | |
SBS | Chr10 | 4023647 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 7707566 | G-C | Hetero | INTERGENIC | |
SBS | Chr10 | 10586596 | A-G | Hetero | INTERGENIC | |
SBS | Chr11 | 12761571 | A-G | Homo | INTERGENIC | |
SBS | Chr11 | 15289736 | T-A | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr6 | 15859 | 15860 | 1 | |
Deletion | Chr8 | 3847001 | 4010000 | 162999 | 19 |
Deletion | Chr9 | 3955044 | 3955054 | 10 | |
Deletion | Chr4 | 4854931 | 4854933 | 2 | |
Deletion | Chr1 | 6422826 | 6422829 | 3 | OsKitaake01g081200 |
Deletion | Chr4 | 6458961 | 6458969 | 8 | |
Deletion | Chr6 | 6466487 | 6466489 | 2 | |
Deletion | Chr11 | 11004137 | 11004138 | 1 | |
Deletion | Chr8 | 12305217 | 12305232 | 15 | |
Deletion | Chr5 | 14277001 | 14309000 | 31999 | 2 |
Deletion | Chr7 | 15991728 | 15991730 | 2 | OsKitaake07g132300 |
Deletion | Chr11 | 17246478 | 17246523 | 45 | |
Deletion | Chr6 | 22718729 | 22718731 | 2 | |
Deletion | Chr10 | 23464394 | 23464395 | 1 | OsKitaake10g200300 |
Deletion | Chr8 | 24978271 | 24978275 | 4 | |
Deletion | Chr3 | 30898689 | 30898696 | 7 | OsKitaake03g324500 |
Deletion | Chr1 | 38316938 | 38316939 | 1 | OsKitaake01g408400 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr7 | 23502520 | 23502522 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 23498469 | 23526330 | OsKitaake03g252700 |