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| Mutant Information |
|---|
| Mutant Name | FN-261 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-261 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9023310 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 11467631 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 14803173 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33819372 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 25950829 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14201657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36464671 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8285868 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 15766409 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 20644870 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 28327067 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 712735 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6786213 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5415847 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14064616 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17291069 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 22899962 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28753664 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7985384 | T-G | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 8416385 | C-A | Homo | INTRON | |
| SBS | Chr12 | 17474260 | G-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4796006 | 4796007 | 1 | |
| Deletion | Chr4 | 5900727 | 5900728 | 1 | |
| Deletion | Chr9 | 9694573 | 9694575 | 2 | OsKitaake09g058900 |
| Deletion | Chr5 | 10130633 | 10130634 | 1 | |
| Deletion | Chr8 | 12618944 | 12618945 | 1 | |
| Deletion | Chr10 | 13099001 | 13287000 | 187999 | 2 |
| Deletion | Chr12 | 15664871 | 15664872 | 1 | |
| Deletion | Chr3 | 19273001 | 19341000 | 67999 | |
| Deletion | Chr1 | 22110810 | 22110819 | 9 | |
| Deletion | Chr12 | 25470060 | 25470061 | 1 | |
| Deletion | Chr6 | 26955193 | 26955198 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13850924 | 13850926 | 1 | |
| Insertion | Chr4 | 21162569 | 21162605 | 35 | |
| Insertion | Chr8 | 8960295 | 8960297 | 1 | |
| Insertion | Chr9 | 8005391 | 8005393 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 6032136 | 6415260 | OsKitaake06g079400 |
| Inversion | Chr6 | 6032159 | 6415270 | OsKitaake06g079400 |
| Inversion | Chr1 | 29110385 | 30105388 | 2 |
| Inversion | Chr1 | 29110388 | 30105394 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 6941986 | Chr2 | 7155268 | OsKitaake02g096000 |
| Translocation | Chr4 | 6943890 | Chr2 | 7155267 | OsKitaake02g096000 |