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Mutant Information

Mutant Name	FN-262 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-262 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 25601043 T-C Homo INTERGENIC
SBS Chr3 20872469 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g232500
SBS Chr4 13246180 T-C Homo INTERGENIC
SBS Chr4 29010617 G-A Hetero INTERGENIC
SBS Chr4 34997322 G-T Homo INTERGENIC
SBS Chr5 2219159 C-T Hetero INTRON
SBS Chr5 17728430 C-A Hetero INTERGENIC
SBS Chr5 29188131 A-G Homo INTRON
SBS Chr6 1834656 C-G Hetero INTERGENIC
SBS Chr7 1640253 A-T Hetero UTR_3_PRIME
SBS Chr7 8011949 C-T Homo INTERGENIC
SBS Chr8 7095345 C-A Hetero INTERGENIC
SBS Chr8 16251822 T-A Hetero INTERGENIC
SBS Chr8 24471199 A-G Hetero INTERGENIC
SBS Chr9 5667619 G-A Hetero UTR_3_PRIME
SBS Chr9 9692588 A-C Homo INTRON
SBS Chr9 20573268 A-T Hetero UTR_3_PRIME
SBS Chr10 5345923 G-C Hetero INTERGENIC
SBS Chr10 11204787 G-T Hetero INTERGENIC
SBS Chr11 9417112 G-A Hetero INTRON
SBS Chr11 24696798 G-A Hetero INTERGENIC
SBS Chr11 27627135 C-T Hetero INTRON
SBS Chr12 1981510 C-T Hetero INTERGENIC
SBS Chr12 17295860 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr10 2028710 2028711 1
Deletion Chr3 7110908 7110910 2
Deletion Chr1 9827809 9827811 2
Deletion Chr1 13658916 13658919 3
Deletion Chr1 18830491 18830505 14
Deletion Chr6 19423529 19423539 10
Deletion Chr3 21516574 21516583 9
Deletion Chr1 22253263 22253264 1 OsKitaake01g212700
Deletion Chr12 26505219 26505221 2
Deletion Chr5 28205015 28205016 1
Deletion Chr11 29046529 29046530 1
Deletion Chr5 29227031 29227035 4
Deletion Chr2 29431343 29431345 2
Deletion Chr4 31387001 31424000 36999 3
Deletion Chr2 32648998 32648999 1 OsKitaake02g334100

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29561350 29561353 2
Insertion Chr5 20291898 20291901 2
Insertion Chr2 13804104 13804106 1
Insertion Chr3 32330345 32330347 1
Insertion Chr6 11200865 11200886 20
Insertion Chr8 7323137 7323139 1
Insertion Chr9 10160983 10160987 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	25601043	T-C	Homo	INTERGENIC
SBS	Chr3	20872469	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g232500
SBS	Chr4	13246180	T-C	Homo	INTERGENIC
SBS	Chr4	29010617	G-A	Hetero	INTERGENIC
SBS	Chr4	34997322	G-T	Homo	INTERGENIC
SBS	Chr5	2219159	C-T	Hetero	INTRON
SBS	Chr5	17728430	C-A	Hetero	INTERGENIC
SBS	Chr5	29188131	A-G	Homo	INTRON
SBS	Chr6	1834656	C-G	Hetero	INTERGENIC
SBS	Chr7	1640253	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	8011949	C-T	Homo	INTERGENIC
SBS	Chr8	7095345	C-A	Hetero	INTERGENIC
SBS	Chr8	16251822	T-A	Hetero	INTERGENIC
SBS	Chr8	24471199	A-G	Hetero	INTERGENIC
SBS	Chr9	5667619	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	9692588	A-C	Homo	INTRON
SBS	Chr9	20573268	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	5345923	G-C	Hetero	INTERGENIC
SBS	Chr10	11204787	G-T	Hetero	INTERGENIC
SBS	Chr11	9417112	G-A	Hetero	INTRON
SBS	Chr11	24696798	G-A	Hetero	INTERGENIC
SBS	Chr11	27627135	C-T	Hetero	INTRON
SBS	Chr12	1981510	C-T	Hetero	INTERGENIC
SBS	Chr12	17295860	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr10	2028710	2028711	1
Deletion	Chr3	7110908	7110910	2
Deletion	Chr1	9827809	9827811	2
Deletion	Chr1	13658916	13658919	3
Deletion	Chr1	18830491	18830505	14
Deletion	Chr6	19423529	19423539	10
Deletion	Chr3	21516574	21516583	9
Deletion	Chr1	22253263	22253264	1	OsKitaake01g212700
Deletion	Chr12	26505219	26505221	2
Deletion	Chr5	28205015	28205016	1
Deletion	Chr11	29046529	29046530	1
Deletion	Chr5	29227031	29227035	4
Deletion	Chr2	29431343	29431345	2
Deletion	Chr4	31387001	31424000	36999	3
Deletion	Chr2	32648998	32648999	1	OsKitaake02g334100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes