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| Mutant Information |
|---|
| Mutant Name | FN-263 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-263 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4358604 | G-C | Homo | INTRON | |
| SBS | Chr1 | 10402566 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 31091460 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6696199 | C-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr2 | 9697554 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22364903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22885685 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 28206564 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31969447 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17736780 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19794746 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3668826 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21004528 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 25726021 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 30166877 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 8333250 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 11583075 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19406751 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20413750 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4001072 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 10655184 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3528628 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12528327 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23732035 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23264544 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8733636 | C-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3032224 | 3032390 | 166 | OsKitaake05g035600 |
| Deletion | Chr2 | 3958030 | 3958046 | 16 | |
| Deletion | Chr2 | 5524590 | 5524594 | 4 | |
| Deletion | Chr9 | 5716447 | 5716538 | 91 | |
| Deletion | Chr6 | 7549896 | 7549947 | 51 | |
| Deletion | Chr2 | 7712237 | 7712239 | 2 | |
| Deletion | Chr1 | 9859899 | 9859900 | 1 | |
| Deletion | Chr4 | 11237427 | 11237428 | 1 | |
| Deletion | Chr9 | 12153966 | 12154100 | 134 | OsKitaake09g078700 |
| Deletion | Chr8 | 14049385 | 14049391 | 6 | |
| Deletion | Chr5 | 15149474 | 15149476 | 2 | |
| Deletion | Chr11 | 20691268 | 20691273 | 5 | |
| Deletion | Chr2 | 23777472 | 23777663 | 191 | |
| Deletion | Chr8 | 24035081 | 24035092 | 11 | |
| Deletion | Chr2 | 27569717 | 27569719 | 2 | |
| Deletion | Chr3 | 35339037 | 35339038 | 1 | OsKitaake03g387600 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 3001213 | 3349523 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 5897587 | Chr6 | 1879658 |